Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00273 ATGGCAGAATTAGATCAAGAACTTGATCCTCCTCCCTTCTTTCTTTGCCCCATCTCTCTCCAAATTATGAAAGACCCCGTCACGGTTGCTTCTGGCATAACCTACGACCGCGAAAGCATCGAGAGATGGTTGTTTTCAGATAGACATAAGACGTGTCCCATCACACAGGTCGTCTTGTCGAACTTCGACATCACTCCCAACCATACTCTAAGACGAGTCATTCAAGCTTGGTGTACTGTCAATGCTTGCAAGGGCGTCGAGAGGATTCCGACGCCTAAGCCACCGGTCGATTGTAAACAAGTGGTTCGAATTCTTGCAGATGCCAAGTTGTCTTCGTTCTCGCAACAGAATTGTCTCCGACGACTCCAATCTATTGCAGCGGCGAGTGAATCTAATAAACGTTGCATGGAAGCTGCTGGAGCTGTGGAGTTCTTGGCCGGAATTGTGTGTAATTCCACCAACGTGGAATTCAGCTTAGAAGATTACGCTTACTTGATTGACGACCAGTTGGCGAATTTGGGATTTGAGGCTTTGAGCATTCTTTACAAACTTCAAATCTCCGAATCCGGCCTGAAATTTCTACTCGCCAACAATGGCGGCATCTTCGTCTCAACCTTAACCAAAATCTTGCAAAACGGAACCTATGGCTCCCGAACATATTCAGTAATGCTTCTCACTTCAATGTTCGAAGTTGCAGATCAGATTCAGATCCTCAGCCTAAACACCGATTTCTTCGTCGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCTTCGAAATCGGCATTGAAACTGCTAATCGGTCTTTGTTCGAGTTCCAGAAACAGAGTTAAGGCGGTCAAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCGTCAGAGAAGCGTTCGTGCGAGATGATTCTCGTGACGCTCGATCTACTCTGCGGCTGCGCCGACGGCAGGGCGGAGGTATTGAATCACGCGGCAGGGATCGCTATTGTGTCGAAGAAGATTCTGAGAGTTTCGACACTCGGAAGCGAAAAGGCCGTCGGAATCTTGTGCTCTATCGCGAGATTCTCGGCGAGTGAAAGCGTCGTCCAGGAAATGATGCGGCTCGGAGTTGTGACGAAGCTCTGTTTTCTGCTTCAGGTCGCCGGCGCCGGAGGCAAAGCGAAGGAGAAAGCGAAAGAGATTCTGAAGCTTCATGGTCGGACATGGCGGAATTCTTCATGTTTGCCTTCGAGTCTGCGATCTTCTTTTCCACATTAG 1272 48.74 MAELDQELDPPPFFLCPISLQIMKDPVTVASGITYDRESIERWLFSDRHKTCPITQVVLSNFDITPNHTLRRVIQAWCTVNACKGVERIPTPKPPVDCKQVVRILADAKLSSFSQQNCLRRLQSIAAASESNKRCMEAAGAVEFLAGIVCNSTNVEFSLEDYAYLIDDQLANLGFEALSILYKLQISESGLKFLLANNGGIFVSTLTKILQNGTYGSRTYSVMLLTSMFEVADQIQILSLNTDFFVEIVQILKDQISKQASKSALKLLIGLCSSSRNRVKAVKAGAVPVLIDLLLDLDSSEKRSCEMILVTLDLLCGCADGRAEVLNHAAGIAIVSKKILRVSTLGSEKAVGILCSIARFSASESVVQEMMRLGVVTKLCFLLQVAGAGGKAKEKAKEILKLHGRTWRNSSCLPSSLRSSFPH 423
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 3990423 3992842 - CmoCh03G002730.1 Cmo03g00273 377736
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00273 423 Pfam U-box domain 11 79 IPR003613 GO:0004842|GO:0016567
Cmo03g00273 423 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842|GO:0016567
Cmo03g00273 423 Gene3D - 98 405 IPR011989 -
Cmo03g00273 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Cmo03g00273 423 PANTHER WDSAM1 PROTEIN 7 422 IPR045185 GO:0061630
Cmo03g00273 423 SUPERFAMILY ARM repeat 104 385 IPR016024 -
Cmo03g00273 423 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cmo03g00273 423 SUPERFAMILY RING/U-box 7 85 - -
Cmo03g00273 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 7 422 - -
Cmo03g00273 423 SMART Ubox_2 13 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00273 Cmo-Chr3:3990423 Cmo06g00526 Cmo-Chr6:2541838 5.56E-152 dispersed
Cmo03g00273 Cmo-Chr3:3990423 Cmo07g01224 Cmo-Chr7:6671103 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00273 - - cmo:103485961 648.277