Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00275 ATGGCTGCCTACGCTTTGCTTGGCGATTCCACTGGACGTGTTAATGGCGGTTTTGATGATAGTCCTTTGACGAGTGCATCGACGAACAGTAACGGCAGTGAAGAACGTAATCATCAACAGACTGTTCAAGTTCAGGTTATTCAGTCGCGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATGGAGATCGACGGCGGTGGAGTCACTGCATCTGTTCATTCTCGGCTTTCGCGGCGGAGTTTAGGTTCCGATCGTCCTTTTGGTTGTGGAGAAATTAAAGGGAATGTGAATTATTGTTCTTCTTCAAACCCTAGCCATGGCGGTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGGTGTAATCGAAGGGACAAATTTATCAAATCCTCCTTCTGCTTCTGATGCTACGGCCTCTTCCACTACCTCCAACAATAACAATAACAACAACGCGACTCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCTCAGCCCCACCATCACTTGCAGAATCCTGCAGTCTGTGGTTTCTCTGGTTTGCCGTTGTTCCCACCGGAATCGAATCACCACCACAAGTTAAATACTCGGAGTAATCCTTTTCCCCTTCCTAATCCATCTCAGATTCTTCTTCATAATCCTCCCACTACTGCAACATCCTCCATTATCGCCGCCGCTTCTTCTCCCATGGATGATTCCTCCGCCACCGCTTGGATCGACGGCATCATTAAGGACTTAATCCACAGCTCCACCGCCATATCCATTCCTCAGCTTATTCAGAACGTACGTGAGATTATCTACCCCTGTAACCCCAATCTTGCGAACCTTCTTGAGTTTCGTCTTCGTACTTTGACGGAACCTAGTGTTCCTAACTTCGTTGCTGAGGATCACCGATTGAGGAAATCCGCTTTGCCGTTGCCGGCGCCGGTGGCCGGGCTGGGGTTGCAGCAGAGGCAGTTCAATCAAGAACAGCATGAGCAAGAGCATGATTGTTCTGGTTTGAAGCTTAATCTCGATTCTTCTTCTCTGCATAATTTTTCTACTTTCCCCTCTCATCCACCGTTTCATGAGCCGTATCTTCACTGGGGAGCAACCACTCCACCAGTGCCCACCCCCTCCGGCGAGGATGCCTTACAGCGGCTCCCCGGTCATCATCAACTTAATCTCTCTTCTGTTACACCGTCGTCGCTTGTTTCTCTAAACCATGTCCCTTCAAAGCCACAATCAGAACAGCAGAACTCCTGTCCGGTGAATGTAAAGGCGGCGGTGGCACAGCCGCCGCCAGCGGCAGCGCCACAGCCGAGTAATAACCCTTCAGCCACTGCTTTGCTAATTAGAGAGATTAAAGAGGAAATGAGGCAACAGAAGAGAGACGAAGAAGGGTTACATCTCTTGACATTACTTCTTCAATGTGCCGAAGCCGTTTCTGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGTTGTCCACACCCTTCGGCACATCGGCACAGAGGGTAGCAGCGTATTTCTCAGAAGCAATGTCGGCGAGGCTTGTAAGCTCATGTTTAGGCATATATGCAGCTCTGCCGCCATCGTTGATGCCCCATACCCACAGCCAGAAGATAGCTTCAGCCTTCCAGGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACTGCCAATCAAGCCATACAAGAAGCTTTTGAAAGGGAAGAGAGAGTTCACATTATAGATCTAGACATCATGCAAGGCCTTCAATGGCCTGGTCTCTTCCACATCTTGGCGTCTAGGCCTGGCGGGCCGCCGTATGTCCGCCTTACAGGGCTAGGGACCTCTCAGCAAGTTCTTGAGGCCACTGGCAAGCGCCTCACTGAATTCGCCGAGAAGCTAGGCCTTCCCTTCGATTTCTTCCCTGTGGCTGATAAAATTGGCAATTTAGACTTGGAGAGGCTCAACGTGAGCAAAAGGGAAGCCGTTGCCGTTCATTGGATGCAGCACTCTCTTTATGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAGAGATTGGCCCCAAAAGTGGTGACGGTGGTGGAACAAGATCTAAGCCACACAGGCTCGTTCTTGGGGAGATTCGTAGAGGCCATTCACTACTATTCCGCACTGTTCGACTCATTGGGTGTCAGCTATGGCGAAGAGAGTGAAGAGAGACACTTAGTGGAGCAGCAACTTTTGTCAAGGGAGATCAGAAACGTGCTGGCCGTGGGTGGGCCGTCGAGGACCGGCGAAGTAAAGTTCCAAAACTGGAGAGAAAAGCTACAGCAATCTGGGTTTAAGGGCATTTCTCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTAGAAGATCATGGGACTCTGAAACTTGGATGGAAGGATCTCTGTTTGCTCACAGCCTCAGCTTGGAAGCCGCCCTTTCATCATCATGCCGCCGCCGCCGCTGCTGCTACTGCACCGGCCACCAACAACAACCACATTCCACGGTACTGA 2556 50.12 MAAYALLGDSTGRVNGGFDDSPLTSASTNSNGSEERNHQQTVQVQVIQSRKMVRKRIASEMEIDGGGVTASVHSRLSRRSLGSDRPFGCGEIKGNVNYCSSSNPSHGGNHSTVHNLTALTSGVIEGTNLSNPPSASDATASSTTSNNNNNNNATLLDSTLPVLRPQPHHHLQNPAVCGFSGLPLFPPESNHHHKLNTRSNPFPLPNPSQILLHNPPTTATSSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTEPSVPNFVAEDHRLRKSALPLPAPVAGLGLQQRQFNQEQHEQEHDCSGLKLNLDSSSLHNFSTFPSHPPFHEPYLHWGATTPPVPTPSGEDALQRLPGHHQLNLSSVTPSSLVSLNHVPSKPQSEQQNSCPVNVKAAVAQPPPAAAPQPSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLMPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQQVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRTGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDHGTLKLGWKDLCLLTASAWKPPFHHHAAAAAAATAPATNNNHIPRY 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4017235 4020985 - CmoCh03G002750.1 Cmo03g00275 377738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00275 851 MobiDBLite consensus disorder prediction 17 40 - -
Cmo03g00275 851 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 139 827 IPR005202 -
Cmo03g00275 851 MobiDBLite consensus disorder prediction 14 40 - -
Cmo03g00275 851 ProSiteProfiles GRAS family profile. 456 825 IPR005202 -
Cmo03g00275 851 MobiDBLite consensus disorder prediction 124 155 - -
Cmo03g00275 851 Pfam GRAS domain family 466 825 IPR005202 -
Cmo03g00275 851 PANTHER PROTEIN SCARECROW 139 827 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00275 Cmo07g01227 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00275 Cmo-Chr3:4017235 Cmo04g00661 Cmo-Chr4:3290743 1.68E-160 dispersed
Cmo03g00275 Cmo-Chr3:4017235 Cmo07g01227 Cmo-Chr7:6689035 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9370 PF03514 GRAS 7.00E-127 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00275 - - bhj:120074183 1398.65