Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00278 ATGGGGAGTTCTGGATTCTCGTGGACATTGCCCGATCATCCTAAGCTTCCCAAGGATAAGACAGTGGCTCTTATTGTTTTAGATGGATGGGGTGAAGCTAATCCAGATCTCTACAATTGTATCCATGTCGCCGAAACTCCCACCATGGATTCCCTTAAGAAGGGCGCCCCCGAGCATTGGAGGTTGCTCAGGGCACATGGTAAGGCTGTAGGACTTCCTACTGAAGATGACATGGGAAACAGTGAGGTCGGACACAACGCGCTTGGTGCTGGACGTATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTTGCCTCTGGAAAAATATATGAGGGAGAAGGATTCAAGTACATCAAGGAATCCTTTGCAACTGGCACTTTGCATCTTATAGGATTACTGAGTGATGGTGGAGTACACTCTAGGCTAGATCAGTTGCAGGTAAGCATAGAAATCTTCTCCAGAGCAAGTGAGAATGGTGCTAAAAGAATCCGTGTCCATATACTTACTGATGGGCGTGATGTTTTGGATGGTTCGAGTGTAGGTTTTGTAGAGACTCTTGAAAATGACCTTGCCAAATTACGTGAGAATGGGGTTGATGCACAAGTCGCATCTGGTGGTGGTCGTATGTATGTGACTATGGATCGTTACGAGAATGATTGGGAAGTTGTGAAGCGTGGATGGGATGCACAAGTGCTTGGAGAAGCACCACACAAGTTCAAAAGTGCTCTTGAAGCTGTCAAGAAATTAAGAGAGGCACCCAAGGCAACTGATCAATATCTACCTCCATTTGTCATAGTTGACGATAGTGGGAAGTCTGTCGGCCCAATAGTGGATGGCGATGCTGTAGTTACCTTCAATTTTAGAGCAGATCGAATGACTATGGTTGCCAAAGCCCTTGAGTATGAAGATTTTGATAAATTTGACCGAGTTAGGGTCCCTAAAATTCGTTATGCTGGAATGCTTCAGTATGATGGTGAATTGAAGCTTCCAAGCCGATACCTTGTTTCTCCCCCAGAGATTGAGAGAACATCTGGGGAATATCTTGTGCACAATGGCGTTCGAACCTTTGCCTGCAGTGAGACCGTCAAGTTTGGTCATGTTACTTTCTTCTGGAACGGAAACCGGTCTGGATACTTCAACCCAGAAATGGAGGAATATGTGGAGATTCCTAGTGATTCTGGGATCACCTTTAATGTTCAACCAAAGATGAAGGCCATAGAGATCGCTGAGAAGGCAAGAGACGCTATTCTTAGCCGGAAATTCCATCAGGTACGTGTTAACCTTCCAAATGGTGACATGGTGGGTCACACTGGTGATATTGAGGCCACAGTTGTAGCTTGCAAGGCTGCTGATGAAGCTGTAAAAATGATTCTCGATGCAATTGAACAAGTAGGGGGAATTTTTGTCGTAACTGCAGATCACGGAAACGCAGAGGACATGGTGAAAAGAAACAAGGCTGGGCAGCCTCTTCTCGACAAAAATGGCAAAATTCAAATCCTCACTTCTCACACTCTTGAGCCAGTTCCTATTGCAATCGGAGGTCCAGGACTGGCCGCCGGAGTCAGATTCCGTAAGGATGTTCCTGATGGAGGACTGGCCAATGTTGCTGCAACTGTTATGAATCTCCATGGTTACCAAGCTCCGAGTGACTACGAGGTGTCCCTAATTGAGGTCGTCGATAGCTAA 1689 46.06 MGSSGFSWTLPDHPKLPKDKTVALIVLDGWGEANPDLYNCIHVAETPTMDSLKKGAPEHWRLLRAHGKAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEGEGFKYIKESFATGTLHLIGLLSDGGVHSRLDQLQVSIEIFSRASENGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAKLRENGVDAQVASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKSALEAVKKLREAPKATDQYLPPFVIVDDSGKSVGPIVDGDAVVTFNFRADRMTMVAKALEYEDFDKFDRVRVPKIRYAGMLQYDGELKLPSRYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFNPEMEEYVEIPSDSGITFNVQPKMKAIEIAEKARDAILSRKFHQVRVNLPNGDMVGHTGDIEATVVACKAADEAVKMILDAIEQVGGIFVVTADHGNAEDMVKRNKAGQPLLDKNGKIQILTSHTLEPVPIAIGGPGLAAGVRFRKDVPDGGLANVAATVMNLHGYQAPSDYEVSLIEVVDS 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4040654 4044483 + CmoCh03G002780.1 Cmo03g00278 377741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00278 562 Gene3D Alkaline Phosphatase, subunit A 22 549 IPR017850 -
Cmo03g00278 562 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 1 561 IPR005995 GO:0004619|GO:0006007
Cmo03g00278 562 SUPERFAMILY Alkaline phosphatase-like 20 551 IPR017850 -
Cmo03g00278 562 Pfam Metalloenzyme superfamily 20 547 IPR006124 GO:0003824|GO:0046872
Cmo03g00278 562 PIRSF IPGAM 15 560 IPR005995 GO:0004619|GO:0006007
Cmo03g00278 562 Pfam BPG-independent PGAM N-terminus (iPGM_N) 102 325 IPR011258 GO:0004619|GO:0005737|GO:0006007|GO:0030145
Cmo03g00278 562 Coils Coil 184 204 - -
Cmo03g00278 562 CDD iPGM 20 557 IPR005995 GO:0004619|GO:0006007
Cmo03g00278 562 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 96 334 IPR036646 GO:0004619|GO:0005737
Cmo03g00278 562 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 2-RELATED 1 561 - -
Cmo03g00278 562 Gene3D - 96 343 IPR036646 GO:0004619|GO:0005737
Cmo03g00278 562 TIGRFAM pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 21 551 IPR005995 GO:0004619|GO:0006007
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00278 Cmo07g01231 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00278 Cmo-Chr3:4040654 Cmo07g01231 Cmo-Chr7:6716325 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00278 K15633 - csv:101217925 1038.87