Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00286 ATGGAAGGGTCTGGTATCGACCCTGACTCTCATAGAGCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGATTGTTATCTGCCTCGAATATTATTCAGGCTCCACTTTCTGCTCTATTAGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAAGAACCTGAGGCGTTGATAAGTGCACGACTGCCTTCGGCTTTTCGAGGCCATCTTCGCAGCCAGATTGACGAATCTTCGGGTGCCAGTAATGATGGAGAGGTTTTGATTAGGATAATTGGGGATGGGGAACCAGAACATGGGAGAGATGGTGCTGGACTAGTAGTTGGGCAAGCGAGGGAAGTCAATGGTCGGAATGCAGTGTCTTCGCAATCTGTGACCTTGGCGTCGGAGCTTAGCCAGGGAGATTCTGCTACTGAACGTGGTGCTCGAGAGGGCATTCCTCAATCGAGAAATGCAGGCGCTGATGGGGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTATCAAAGGTACGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATATGGATTGCTGCTTTCATGTACAAGTCAAACGATATTTTGCGAAAACAAACAGCGTTAAAGGGGGAGAGAAAAATCTCTGTGTTGGTTGGCATATCTCTTGTATTCACCATTCATGTCATTGGTGTGTACTGGTGGTATCAAAATGATGGCCTTTTATATCCGCTGATCATGCTTCCTCCTCGAGCAATACCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAACGACACTTTGGTCCGCCAAGCAGTGATGGTGGTGAAGTGCATTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCGACGTCCGAGCAGGTGAATGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCACGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGTCCATTGTGTAGGGCTTTGGTTAAACCTGCAGATCTGAGGTCATTTGGTGATGGATCAACCAGTCTGTTTTTCCAGGTTTTCTAA 1233 46.96 MEGSGIDPDSHRAASTSGSSRRFGLLSASNIIQAPLSALLEYSGLLRGRPSHQEPEALISARLPSAFRGHLRSQIDESSGASNDGEVLIRIIGDGEPEHGRDGAGLVVGQAREVNGRNAVSSQSVTLASELSQGDSATERGAREGIPQSRNAGADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLVFTIHVIGVYWWYQNDGLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCILLMYYKNSRGRNYRKQVQSFFAALKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4090919 4096520 - CmoCh03G002860.1 Cmo03g00286 377749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00286 410 ProSiteProfiles Zinc finger RING-type profile. 349 387 IPR001841 -
Cmo03g00286 410 MobiDBLite consensus disorder prediction 119 169 - -
Cmo03g00286 410 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 315 410 - -
Cmo03g00286 410 CDD RING-HC_RNFT1_like 348 387 - -
Cmo03g00286 410 ProSitePatterns Zinc finger RING-type signature. 364 373 IPR017907 -
Cmo03g00286 410 Pfam Zinc finger, C3HC4 type (RING finger) 347 390 - -
Cmo03g00286 410 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 315 410 IPR044235 GO:0061630|GO:1904294
Cmo03g00286 410 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 317 - -
Cmo03g00286 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 397 IPR013083 -
Cmo03g00286 410 SMART ring_2 349 386 IPR001841 -
Cmo03g00286 410 SUPERFAMILY RING/U-box 341 392 - -
Cmo03g00286 410 MobiDBLite consensus disorder prediction 119 136 - -
Cmo03g00286 410 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 317 IPR044235 GO:0061630|GO:1904294
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00286 Cmo07g01242 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00286 Cmo-Chr3:4090919 Cmo04g01120 Cmo-Chr4:5713697 2.57E-145 dispersed
Cmo03g00286 Cmo-Chr3:4090919 Cmo07g01242 Cmo-Chr7:6789457 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00286 - K22379 csv:101205267 714.916