Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00291 ATGAGGAGGGATCGTGTGTGCGTTTTTCTGCTCTTGTGTTGCTGCTCTATGCTACTTTCTGGTGCTGCAATCACAGAGCCATCTGATGTTGAAGCATTGCTAACGTTAAAGAGGAGTCTGATTGATCCTATGGACAATCTTAAAAATTGGAATAATGGAGATCCTTGCACAACTAATTGGACTGGAGTAGTATGTAGCGTTTTCGATGGAGCGGTCGGGAACTTACGTGTCAAAGAACTCCAGCTACTGAATATGAACCTATCTGGAAACTTAGCCCCTGAGATCAGCCAATTGTCTCAGCTTGAGAATTTAAATTTCATGTGGAATAACCTAACTGGTTTAATTCCGAAGGAGATTGGCAGTATGAGGCCGCTGAAACTTTTGCTCTTAAATGGAAATAAATTCTCCGGTCCTCTTCCGGATGAGCTTGGTAATCTTACAAATCTCAAACGATTTCAAATAGATGAGAACCAAATTTCAGGGCATATCCCAAAATCATATGCCAACTTGACCCATGTGAAGCACCTCCACTTCAATAACAACACTTTAAGTGGTGAAATTCCATCTGAGCTTTCCAGATTACACAATCTTCTTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCTCTGCCACCAGAATTTTCGTCCTTGCCAAAGCTAAGCATTCTGCAACTTGATAACAACAACTTAGAAGGTGAAATTCCAGCTTCTTATGAAGAATTTTCTACATTAGTGAAATTAAGTCTGAGGAATTGCAGCTTGGAGGGGCCGATTCCTAATTTCAGCAAAATTGCAAACCTCAGTTACTTGGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCATATAACCTCTCTTCTAATATGACAACAATAATTTTGTCACACAACCAGCTGAAAGGATCTATACCCAGAAGTTTATCCAATCTTCATAATCTCCAGAAACTGTCACTTGAGAGTAACTTTTTGAATGGTTCGGTACCTGCATTATGGGAGAAAATGTCCTTCAATTCAAGTGCTCGACTTACACTTGATCTTCGGAACAATTCGTTTTCTGACATTTCTGGAAGCACAAACCCTCCAGCTAATGTCACCCTAAGGCTTGGAGGAAATCCATTCTGCCAAAATTTGAACCGACAAAACTCTGACCTGTTCTGTACGTCTAAAATTGTAGAGGACCAACTGCATAGAAGCTCGAAGAACTCCAATGAAACATGTCGAAGTTGTCCAACAGATAGTTTCTTTGAATACGTTCCAGACACTCCTGACCCGTGCTTTTGTGCATCACCTCTTGGTATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCTTACATATATTCATTTCAAGCGTATCTGACAAAGGAACTTAGTTTGGATAAGCAGCAATTGTTAATCGATTCATACGTTTGGGAAGGATCTCGCCTGAGGATGTATCTAAAGATATTCCCATTATTTGATAGCGGTACTCATGTGTTGAATCAAAGTAAGGTATTTCAAATTACAGAAAAATTTATGTCATGGAATTTCACTCGTGATGACTTTTTTGGCCCATATGAGCTTCTCAACTTCACACTCCCTGGCCATCATCAGACTGTCATTTTCCAGACAGTGAAAACGGGCATTGGTGCGGGCATCCTGGCTGCCATTGTAGTTGGATCTATTACCTGCATTCTTATGATAGTAGCGGTAGCCATACTTCTATTCACTAGGCATTCAAGATACCATCGCAATTTGTCGAGGAAAAAATTCTCTTCAAAGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAGGAAATGCAATCGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCAAGGAGGTTATGGCAAGGTCTATAAAGGCATATTGTCAGATAATTCAGTTGTCGCCATCAAGCGTGCAGAAGAAGGATCCTTACAAGGACAAAAAGAATTCTTGACGGAGATAGAACTCTTATCACGATTGCATCACCGAAACTTAGTTTCGCTGATCGGATATTGTGATGAAGCAGGAGAACAAATGCTGGTTTACGAGTTTATGCCAAATGGAACTTTGCGGGACTGGCTTTCTGGCTTTGAATTTTCTGCCAAAAGCAGAACGACCGTAAATCTGAATTTTCGTATGAGATTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCATACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTCCTCGACGCCAAGCTCACAGCCAAAGTAGCTGATTTCGGGTTATCACGTCTTGCTCCCGATCTAGATTTCGAAGGGGATGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCAGGTTATCTTGATCCAGAGTACTTTTTAACCCGTAAATTAACGGATAAAAGTGATGTCTATAGCCTAGGAGTTGTGTTATTGGAGCTCTTGACGGGAATGCACCCTATATCTTTCGGCAAAAACATTGTTCGTGAGGTCAAATTGGCACATCAAATGGGAACGATTCTTTCAATTGTAGACACCAAGTTGGGTTCTTTCGCATCTGAGTGTTTAGAAAGGTTTGTTGCTTTGGCCCTCAGTTGTTGCCATGACAAGCCAGAAGAGCGGCCATCCATGCTGGTTGTAGTGAGGGAGCTGGAGAACATACTGTACATGATGCCTGACGACAGTGGCGCCTTGTATTCAGACCCGTCCCTGAGATCAAGTGCCGGTCTTCCCTCACCGGTTTCGACGTCGTCCTGCATCACCCGAGACCGGTTTGCATCGGGAAGCATTTCGGGGAGTGATCTCATCAGCGGCGTCGTCCCAACCATCGCCCCTCGCTGA 2862 42.28 MRRDRVCVFLLLCCCSMLLSGAAITEPSDVEALLTLKRSLIDPMDNLKNWNNGDPCTTNWTGVVCSVFDGAVGNLRVKELQLLNMNLSGNLAPEISQLSQLENLNFMWNNLTGLIPKEIGSMRPLKLLLLNGNKFSGPLPDELGNLTNLKRFQIDENQISGHIPKSYANLTHVKHLHFNNNTLSGEIPSELSRLHNLLHLLLDNNNLSGSLPPEFSSLPKLSILQLDNNNLEGEIPASYEEFSTLVKLSLRNCSLEGPIPNFSKIANLSYLDLSWNHFTGPIPPYNLSSNMTTIILSHNQLKGSIPRSLSNLHNLQKLSLESNFLNGSVPALWEKMSFNSSARLTLDLRNNSFSDISGSTNPPANVTLRLGGNPFCQNLNRQNSDLFCTSKIVEDQLHRSSKNSNETCRSCPTDSFFEYVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYIYSFQAYLTKELSLDKQQLLIDSYVWEGSRLRMYLKIFPLFDSGTHVLNQSKVFQITEKFMSWNFTRDDFFGPYELLNFTLPGHHQTVIFQTVKTGIGAGILAAIVVGSITCILMIVAVAILLFTRHSRYHRNLSRKKFSSKIGLKIDGVKAFSFKEMQSATGNFNRSTQVGQGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEAGEQMLVYEFMPNGTLRDWLSGFEFSAKSRTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKLTAKVADFGLSRLAPDLDFEGDVPGHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVLLELLTGMHPISFGKNIVREVKLAHQMGTILSIVDTKLGSFASECLERFVALALSCCHDKPEERPSMLVVVRELENILYMMPDDSGALYSDPSLRSSAGLPSPVSTSSCITRDRFASGSISGSDLISGVVPTIAPR 953
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 4131651 4144255 - CmoCh03G002910.1 Cmo03g00291 377754
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00291 953 ProSiteProfiles Protein kinase domain profile. 615 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00291 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 921 - -
Cmo03g00291 953 SUPERFAMILY L domain-like 25 284 - -
Cmo03g00291 953 Gene3D Phosphorylase Kinase; domain 1 586 690 - -
Cmo03g00291 953 Gene3D Transferase(Phosphotransferase) domain 1 691 902 - -
Cmo03g00291 953 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cmo03g00291 953 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Cmo03g00291 953 Gene3D Ribonuclease Inhibitor 25 288 IPR032675 -
Cmo03g00291 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Cmo03g00291 953 Pfam Protein kinase domain 616 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00291 953 SMART serkin_6 615 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00291 953 CDD STKc_IRAK 621 894 - -
Cmo03g00291 953 SUPERFAMILY Protein kinase-like (PK-like) 600 920 IPR011009 -
Cmo03g00291 953 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 6 921 - -
Cmo03g00291 953 SUPERFAMILY L domain-like 245 377 - -
Cmo03g00291 953 Gene3D Ribonuclease Inhibitor 289 409 IPR032675 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo03g00291 Cmo07g01248 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00768 Cmo-Chr1:3972850 Cmo03g00291 Cmo-Chr3:4131651 0 dispersed
Cmo03g00291 Cmo-Chr3:4131651 Cmo13g00001 Cmo-Chr13:22044 0 dispersed
Cmo14g00001 Cmo-Chr14:550 Cmo03g00291 Cmo-Chr3:4131651 9.00E-54 wgd
Cmo03g00291 Cmo-Chr3:4131651 Cmo06g00168 Cmo-Chr6:914044 4.53E-166 wgd
Cmo03g00291 Cmo-Chr3:4131651 Cmo07g01248 Cmo-Chr7:6829015 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74166 PF00069 Pkinase 6.30E-46 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00291 - - bhj:120073192 1583.16