Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00295 ATGAGGCTACATTCCCTTTTTGCACCATTTTTACTCTTACTTTCCTTCATTGAGGCTGATCTAAACTCAGACAAGCAAGCTCTTCTCGAGTTTATTTCGACCGTTCCCCACGGTCGAAAAATCAACTGGGATCCCTCTACCCCCGTCTGCACGGCTTGGGTTGGCATCACGTGCACTTCCAACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTTTGGTCCGATACCCGCCAATACACTTGGAAAGTTAGGCGCTCTTAGAACCTTGAGTCTTCGATCTAACAATCTTAATGGGAACGTTCCATCGGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTCAAATATCTTCTTCCCTGTCTCCTAGCCTTACCTTCCTCGATCTGTCGTTCAACTCTCTCACGGGAAGCATTCCGACATCGATACAAAATCTCACGCAGCTCACTAGCTTCAATGTTCAAAACAACTCCCTGACCGGATCCGTTCCTGATATCGGTCACCTAAAGCTTAAACTATTGAACGTGAGCTACAACCATCTTAGCGGTCGTATTCCCGCTTCACTGCAATCATTTCCTCCTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCACCTCTGAAAAATTGTTCACTTGGTGCTCCCTTACCTTCTCCATCTCCCACTTCTTCGACTCGGCCAAAGAACGAAAAGAGAATAAACATTGGAGCCATCGTTGCCATTGCCTTGGGTGGTTCTGCATTGCTCTTCCTCGTCACGATATTGATTGTCGTCTGTCGTATAAAGAAAAAGGATGGCGAAGTTAGTACCGTTGCTGCGAAAGGAAAGGGCAAAAGGAGTGAGCAACCAAAGGAGGATTTCGGAAGCGGGGTACAAGAGCCCGAGAAAAATAGGCTCGTGTTCTTTGAAGGGTGTTCGTATAACTTTGATCTCGAGGACCTGTTAAGGGCCTCCGCCGAAGTACTCGGAAAAGGGAGTTACGGGACTACTTACAAGGCGATCTTGGAGGATGGAATTACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTAGCTGGGAAGAAGGATTTTGATCAACAAATGGAGATTGTTGGGAGAATCGGTCAGCATCCGAACGTCGTGCCTCTCCGTGCCTATTACTACTCGAAAGACGAGAAGCTTTTAGTTTACGATCACGCCATTGCTGGAAGCTTTTCCTCATTACTCCATGGAAGCCGAGATGGTGGAAGAGGGCCACCGGACTGGGAAACACGAGTGAAGGTTTCACTTGGGTGTGCCAAAGGCCTTGCACATATCCATTCATCAAGTGGGGGAAAATTGATCCATGGCAACATAAAGTCCTCTAACATCCTTCTTACACAAGACATGAATGGTTGTATTTCAGATTTTGGCTTGACTCCTTTGATGAACTCTCCAATCATTCCCACTAGAAGCGTAAGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAGTCAACTCAAAAGTCAGACATTTACAGTTTTGGGGTTGTTTTGCTCGAGATGTTGACTGGGAAAGCGCCATCCCAATCGCCTGGCCGTGACGATGTGATGGACCTTCCTAGATGGGTCCAATCTGTGGTTAGAGAAGAATGGACATCTGAGGTATTTGATGTAGAACTAATGAAGTATCAAAACATTGAAGAAGAGCTGGTTCAAATGCTCCAAATAGCAATGGCGTGTGTGTCACGAGTGCCAGATATGAGACCAACGATGGAGGAAGTTGTTAGGATGATCGAGGAAATCCGACCATCTGACTCGGGAACTCGACCATCATCAGAAGATAACAAGGACGGAGACGGGGATGGGGATGGGGATGGGGATGGGGATGGAGACGATGACTTGAATACTCCGACCTGA 1911 46.89 MRLHSLFAPFLLLLSFIEADLNSDKQALLEFISTVPHGRKINWDPSTPVCTAWVGITCTSNLSNVLALRLPAVGLFGPIPANTLGKLGALRTLSLRSNNLNGNVPSDVLSLPSLKFIYLQHNNFSGQISSSLSPSLTFLDLSFNSLTGSIPTSIQNLTQLTSFNVQNNSLTGSVPDIGHLKLKLLNVSYNHLSGRIPASLQSFPPSSFEGNSLLCGSPLKNCSLGAPLPSPSPTSSTRPKNEKRINIGAIVAIALGGSALLFLVTILIVVCRIKKKDGEVSTVAAKGKGKRSEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEDGITVVVKRLKEVVAGKKDFDQQMEIVGRIGQHPNVVPLRAYYYSKDEKLLVYDHAIAGSFSSLLHGSRDGGRGPPDWETRVKVSLGCAKGLAHIHSSSGGKLIHGNIKSSNILLTQDMNGCISDFGLTPLMNSPIIPTRSVSYRAPEVIETRKSTQKSDIYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRPSDSGTRPSSEDNKDGDGDGDGDGDGDGDDDLNTPT 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4176895 4178906 + CmoCh03G002950.1 Cmo03g00295 377758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00295 636 PANTHER OS05G0480400 PROTEIN 10 615 - -
Cmo03g00295 636 ProSitePatterns Protein kinases ATP-binding region signature. 334 365 IPR017441 GO:0005524
Cmo03g00295 636 Pfam Leucine Rich Repeat 181 203 IPR001611 GO:0005515
Cmo03g00295 636 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515
Cmo03g00295 636 Pfam Protein kinase domain 331 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00295 636 MobiDBLite consensus disorder prediction 616 636 - -
Cmo03g00295 636 SUPERFAMILY L domain-like 34 220 - -
Cmo03g00295 636 CDD STKc_IRAK 334 599 - -
Cmo03g00295 636 ProSiteProfiles Protein kinase domain profile. 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00295 636 MobiDBLite consensus disorder prediction 597 636 - -
Cmo03g00295 636 PANTHER OS05G0588300 PROTEIN 10 615 - -
Cmo03g00295 636 Gene3D Transferase(Phosphotransferase) domain 1 406 619 - -
Cmo03g00295 636 Gene3D Ribonuclease Inhibitor 180 223 IPR032675 -
Cmo03g00295 636 Pfam Leucine rich repeat N-terminal domain 22 58 IPR013210 -
Cmo03g00295 636 MobiDBLite consensus disorder prediction 597 615 - -
Cmo03g00295 636 Gene3D Phosphorylase Kinase; domain 1 296 403 - -
Cmo03g00295 636 SUPERFAMILY Protein kinase-like (PK-like) 332 597 IPR011009 -
Cmo03g00295 636 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00295 Cmo07g01252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00295 Cmo-Chr3:4176895 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo02g00689 Cmo-Chr2:4354239 Cmo03g00295 Cmo-Chr3:4176895 0 wgd
Cmo03g00295 Cmo-Chr3:4176895 Cmo07g01252 Cmo-Chr7:6859505 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74167 PF00069 Pkinase 5.70E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00295 - - csv:101210437 1036.56