Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00298 ATGAAGGAAATTCATAAGTTCCATCTTGCATTTGCATTTGCATCGATCTCTGTTTTCGTTTGCTTGTTCTTCGATGTTCATGTGGTTTTAGCTGACAATTACGTTCCCCGGGATTTCATCCTCCTCGATTGTGGAGGGCCTTCGACTGCCAACGACGTCGATAATCGGAAATGGATGACCGATGACAAATCCAAGTTTATTCCGGCGAGGGGGAATAGCACCGTATCGAAAGCCGCTACCCAGGATCCTTCTGTTCCTGATATCCCTTTCATGACGGCTAGGGTTTTCAACTCTAATTTCACCTACAGCTTTCCTGTGGCCCCTAGTCGTTTATTCGTTCGTCTCTACTTTTACCCTTCTTCTTACAGTGGTCTTAATGCATCTGATGCTCTTTTCTCTGTCTCCACTCAATCCTATACCCTTCTTAAGAACTTCAGCGCTGCACAAACTGCCGAGGCTTTGAATTTTGCTTATATCATCAAGGAATACTCGATCTATGTTGAAGATGGATGGTTGAACTTGACTTTCGTTCCATCCTCCAGTCATCCAAAGGCCTATGCATTTGTGAATGGGATTGAGATTGTATCCATGGCTGATATTTACAGCGATACTTCTGGGACTCTTCTGGTTGTTGGCCCATCTACTCCATTCACTGTGGATAACACCACTGCGCTTGAGAATGTCTATCGGTTGAACGTCGGGGGCAATGATATTATGCCTTCCGGTGATACGGGAATGTATAGGTCTTGGTTTGATGACACACCATATTTGTATGGTGCAGCACAGGGAGTGACAATGACTACTGATCAGAACACGACGATTAATTATCCGCCGAGTATTCCTACTTATGTTGCGCCGGTTGATGTCTACTCCACTGCTAGAGCAATGGGACCTGATAACAATGTCAATTTGAATTATAACATGACATGGATATTGCCCGTTGACTCTGGGTTCTTTTACCTTGTTAGGCTCCATTTTTGTGAGGTTGCTGCAAATATCACAAAAGTCAACCAAAGAGTCTTTGACATTTACATCTTTAATCAAACTGCTATGGATGGTGCAGACGTGGTTGCCTGGGCTGGAAGTAACTATATTCCTGTGTACAAAGATTATGTGGTTTTCATTCCTAGTGGTGGAAGTCCACAGAAGGATTTATGGCTCGAACTGCATCCAGACAAGTCTATGGTCCCCAATTACTACGATTCAATCTTGAACGGAGTGGAGATATTCAAAGTCAGTGACTCAAATGCTAATCTTGCAGGGCCGAATCCTATTCCTGCGCCAAAACAGGAAATTATTGATCCATCATTAGCTAACCCAGCATCTTCTCATGGTAAATCGAAGAATAAGGCAGGGATCATTGCTGGAGTTGTTTGTGGAGTAGCTGCTTTAGCTCTGATCATTGGTTTCTTTGTTGTTGCTAAACGTCGCCGTGGACATGGGAAAGATTCTAGCTCGGTTGAAGGACCGTCTGGATGGCTCCCTCTTTCTCTCTATGGAAATTCCCATTCAGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACCTCCTCCCTGCCTTCCAACCTTTGCCGCCACTTCTCATTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTGGGTGGTTTTGGAAAAGTTTATAAGGGAGTCATTGATGGTGGGACTACGGAAGTTGCCATTAAGCGTGGGAACCCTCTCTCCGAGCAAGGTGTGCATGAATTTCAGACCGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTGTCGTTGATTGGCTACTGCGAAGAGAATTGTGAAATGATCCTGGTTTATGATTGCATGGCTCATGGAACACTGCGAGAACATTTATACAAGACTCACAAGCCACCATTGTCTTGGAGGCAAAGGCTCGAAATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAGTATACAATTATTCACCGAGATGTGAAGACAACCAACATCCTTTTGGATGAAAAGTGGGTGGCAAAAGTATCTGATTTCGGGTTGTCAAAAACGGGTCCTACATTGGATCACACCCATGTTAGCACTGTAGTGAAAGGTAGTTTCGGATACTTGGATCCTGAATACTTTAGGCGACAGCAATTGACTGACAAATCAGATGTTTACTCCTTCGGAGTCGTTCTCTTTGAGGTCCTATGTGCTCGGCCAGCCTTGAACCCAACACTCCCCAAGGAGCAAGTGAGTTTAGCTGAATGGGCTGCACACTGCTACATCAAAGGCATTTTAGATCAGATAATCGACCCATTCCTTAAGGGGAAGATTGCATCGGAGTGTCTCAAGAAATTTGCAGAGACCGCAATGAAATGTGTGTCTGATCAGGGCATCGACAGGCCATCGATGGGCGACGTTCTCTGGAATCTAGAGTTCGCATTGCAGCTGCAGGAGAGTGCCGAAGAGAGTGGCAAGCTAGGCAGCGGGATGGACATAGAAGAAGGTCAGCTCGATGTAGTTTACAAAGGAAAGAAGGATCTAGATGCTTCCCCAGGCATTGATGGAAACATAACCGACTCGAGAAGCACCGGAATCAGTATGAGCATCGGAAGCCGAAGCCTTGCCAGTGAAGATTCGGACGGCTTGACGCCGAGTGCTGTATTCTCACAGATCATGAACCCAAAAGGTCGTTAA 2697 45.46 MKEIHKFHLAFAFASISVFVCLFFDVHVVLADNYVPRDFILLDCGGPSTANDVDNRKWMTDDKSKFIPARGNSTVSKAATQDPSVPDIPFMTARVFNSNFTYSFPVAPSRLFVRLYFYPSSYSGLNASDALFSVSTQSYTLLKNFSAAQTAEALNFAYIIKEYSIYVEDGWLNLTFVPSSSHPKAYAFVNGIEIVSMADIYSDTSGTLLVVGPSTPFTVDNTTALENVYRLNVGGNDIMPSGDTGMYRSWFDDTPYLYGAAQGVTMTTDQNTTINYPPSIPTYVAPVDVYSTARAMGPDNNVNLNYNMTWILPVDSGFFYLVRLHFCEVAANITKVNQRVFDIYIFNQTAMDGADVVAWAGSNYIPVYKDYVVFIPSGGSPQKDLWLELHPDKSMVPNYYDSILNGVEIFKVSDSNANLAGPNPIPAPKQEIIDPSLANPASSHGKSKNKAGIIAGVVCGVAALALIIGFFVVAKRRRGHGKDSSSVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGVIDGGTTEVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDCMAHGTLREHLYKTHKPPLSWRQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYIKGILDQIIDPFLKGKIASECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKLGSGMDIEEGQLDVVYKGKKDLDASPGIDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4189461 4192157 - CmoCh03G002980.1 Cmo03g00298 377761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00298 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Cmo03g00298 898 Pfam Malectin-like domain 42 412 IPR024788 -
Cmo03g00298 898 SUPERFAMILY Protein kinase-like (PK-like) 513 813 IPR011009 -
Cmo03g00298 898 Gene3D Transferase(Phosphotransferase) domain 1 617 831 - -
Cmo03g00298 898 Gene3D - 39 198 - -
Cmo03g00298 898 Gene3D - 224 413 - -
Cmo03g00298 898 PANTHER - 24 864 - -
Cmo03g00298 898 SMART serkin_6 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00298 898 CDD STKc_IRAK 546 812 - -
Cmo03g00298 898 Pfam Protein tyrosine and serine/threonine kinase 546 807 IPR001245 GO:0004672|GO:0006468
Cmo03g00298 898 PANTHER OS07G0166700 PROTEIN 24 864 IPR045272 GO:0004714|GO:0006468
Cmo03g00298 898 MobiDBLite consensus disorder prediction 853 898 - -
Cmo03g00298 898 MobiDBLite consensus disorder prediction 856 891 - -
Cmo03g00298 898 ProSiteProfiles Protein kinase domain profile. 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00298 898 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524
Cmo03g00298 898 Gene3D Phosphorylase Kinase; domain 1 525 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00298 Cmo-Chr3:4189461 Cmo12g01150 Cmo-Chr12:10427951 0 dispersed
Cmo15g00249 Cmo-Chr15:1224041 Cmo03g00298 Cmo-Chr3:4189461 0 transposed
Cmo03g00298 Cmo-Chr3:4189461 Cmo07g01258 Cmo-Chr7:6881896 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74168 PF12819 Malectin_like 4.10E-41 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00298 - - csv:101211171 1627.84