Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00303 ATGACATCTGATCAGCCCCTGCTGGCTTCATCAGAATCCCCATCTCAAAATCGTGGTTCCTTTGGTTGTCTATGTCGCAGTGCTTCTTTTACCTCTTCCAGTTACGACGATTCTCAGAATGACATTGTGGATGTGAAGGAAACCTGCTTTCCTTTTGCATACCCCACCCAGGATAGAAGACGCCTGGTCAAGTGGGGTGCAATGGAGCTACATAATATTAATGATAACCCTGCAAGCTTTGAACTCTCCAGGGTCCAGGAGAAGTTACATAAGGCACAAAGAAGTCGTCATAAAAGTATACAGTTTGAGGATAATTTACAGCATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGAACTAATGATAAGTATGAGTTCACAGGAAATGAGATAACCACCAGCAAGTATACATTGATTACCTTCTTGCCGAAGAATCTCTTTATTCAGTTCCATAGGGTTGCCTATCTTTATTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACGGTATCTCTTTTCCCCCTCCTGTTTGTGCTATGTGTTACAGCTATTAAAGATGGCTACGAGGATTGGCGTAGACATAGATCTGATCGTAATGAGAACAATAGACAGGCTCTCGTGCTTCAATCCGATGAATTCCAATTGAAAGTGTGGAAAAAAATACGAGCAGGTGAAGTTGTGAAGATCTGTGCAGACGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCTAGTGGTCTTGCTTACATACAAACAATGAATTTGGACGGTGAATCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATTTGCAGTAGCCGAGGGGTGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACAACCATAAATTTCCCCTCAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCCGGACAAGAGACAAAAGCCATGTTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATCTTCCTCTTTGTCATGTGTCTAGTTGTGGCCCTTGGAATGGGGTTATGGCTTGTTCGGCACAAGGAACAGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACAAATGGGGCCGACGATGGTAAGAAGTACAGGTTTTATGGAATACCTATGGAAACCTTTTTCTCCTTTTTGAGTTCTATTATAGTGTTCCAGATTATGATACCGATATCCCTTTATATTACAATGGAGATGGTGAGACTGGGGCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTGCTCAAGGTTTCAGTGCAGATCATTGAATATCAATGAGGATCTTGGTCAAGTTCGCTACATTTTTTCTGATAAAACAGGAACACTTACTGAAAATAAGATGGAATTTAAAAGAGCAAGTGTGTACGGGAAGAATTACGGGAACAACTTGACTGAGGGTTATTCATCAATGTATTCCATTCCAGCAACTATAGGGGGGAGGAGGAGGAAACTTAAATCTGAAGTTGCTGTTGATACTGAACTTCTCAAATTATTGCACAAGGACCTAAATGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTAATTCCTATTCTCATGGATGACAAATCTAGTTATGAAAATGGTGAATTGCACGAGGATGTCGAAACTATTGGTTATCAGGGGGAATCCCCTGACGAGCAGGCACTAGTTGCTGCAGCCGCTGCTTATGGATATACCCTTTTCGAGCGCACATCTGGGCATATTGTTATAGATGTCAATGGTGAGAACTTAAGGTTGGATGTTTTGGGTTTACATGAGTTTGATAGCATTCGCAAAAGAATGTCTGTTGTCATCAGATTCCCTGACAATACTATAAAGGTGCTGGTAAAAGGTGCCGATACTTCGATGTTGAGTATTTTAGGCAATGACTCTGATAGGGAAGAATTTATCAAGCATGCTACTCGACGCCATTTGAGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGACCTGAAAGATTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCTAGCACTTCACTGACTGATAGAGCAGTAAAACTACGTCAGACAGCAGCCCTTATAGAATGTGATCTAAAGCTTTTGGGTGCAACTGCTATTGAGGACAAGCTTCAAGACGGTGTACCTGAAGCCATTGAATCTCTTCGACAGGCTGGAATAAAGGTCTGGATTCTGACGGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAATTGCTGACTCCCGATATGCAGTCAATTATTGTCAATGGAAATTCCGAGTATGATTGCAGGAAACTTTTAGCTGATGCTATAGAAAAATATGGTATTAAATCAACACAGGGCAGAAGTCAAACACAGAAGATGAATTGTGAGAATGAACGCCATGATACACCAAAGATATCCGGTATGTCAGATTTTAATGAAGAGAAAGAAGAAGTGACCGATAAACCACTAGCTCTAATAATTGATGGAAACAGTTTGGTGTACATTTTGGAAAAGGAATTGGAGTCAGAGCTTTTTGAACTTGCAACTTCATGCAACGTTGTGCTATGCTGTCGTGTCGCTCCTTTGCAGAAAGCTGGAATTGTTGATCTGATTAAGAGTAGAACTGATGATATGACATTGGCAATTGGCGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGACGTAGGCGTTGGTATATGTGGACAGGAAGGGCGTCAAGCGGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTTTAAAAAGATTACTTCTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTATACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACAGCATTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACGTCTATCCCCACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTCACAAAACCCTACTCCAATATCCTAAGCTCTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTTTGGCAGAGTCTTGTTCTCTTCTATGTGCCATTGTTCATTTACAAGGAGAGTTCCATTGATATATGGAGCTTGGGAAGTTTGTGGACCATAGCTGTTGTTATCCTTGTGAACGTACACTTAGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCAGTCTGGGGATCCATAGTCATAACGTACGCATGCATGGTGGTGTTGGATTCGATACCCGTTTTTCCTAATTACTGGACGATCTTTCATCTGGCTAAGTCCCCAACATATTGGTTGTCTATATTGCTCATAATAGTTGTTGCATTGCTTCCACGCTATCTTTTTAAAGTTGTGCACCAAAGATTCTGGCCCTCGGATATTCAGATAGCCAGAGAAGCCGAGGTACTGAGAAAACGAAAAGGTCGTGAACAGTTTAGTTCAAAGCAAGGTCGAGATTCCAATTAA 3744 41.53 MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKETCFPFAYPTQDRRRLVKWGAMELHNINDNPASFELSRVQEKLHKAQRSRHKSIQFEDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVLQSDEFQLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETAFAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNNHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFVMCLVVALGMGLWLVRHKEQLDTLPYYRKRYFTNGADDGKKYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISCSRFQCRSLNINEDLGQVRYIFSDKTGTLTENKMEFKRASVYGKNYGNNLTEGYSSMYSIPATIGGRRRKLKSEVAVDTELLKLLHKDLNGDEKIAAHEFFLTLAACNTVIPILMDDKSSYENGELHEDVETIGYQGESPDEQALVAAAAAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSIRKRMSVVIRFPDNTIKVLVKGADTSMLSILGNDSDREEFIKHATRRHLSEYSMEGLRTLVVAARDLKDSEFELWQSRYEDASTSLTDRAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTPDMQSIIVNGNSEYDCRKLLADAIEKYGIKSTQGRSQTQKMNCENERHDTPKISGMSDFNEEKEEVTDKPLALIIDGNSLVYILEKELESELFELATSCNVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSHKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLFIYKESSIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLSILLIIVVALLPRYLFKVVHQRFWPSDIQIAREAEVLRKRKGREQFSSKQGRDSN 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4214054 4219417 + CmoCh03G003030.1 Cmo03g00303 377766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00303 1247 Pfam haloacid dehalogenase-like hydrolase 498 812 - -
Cmo03g00303 1247 Pfam Phospholipid-translocating P-type ATPase C-terminal 978 1218 IPR032630 -
Cmo03g00303 1247 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 507 784 IPR023299 GO:0000166
Cmo03g00303 1247 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Cmo03g00303 1247 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 434 529 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo03g00303 1247 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 920 1036 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo03g00303 1247 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 104 1242 - -
Cmo03g00303 1247 Pfam E1-E2 ATPase 212 459 - -
Cmo03g00303 1247 Gene3D - 191 358 - -
Cmo03g00303 1247 SUPERFAMILY Calcium ATPase, transduction domain A 212 354 IPR008250 -
Cmo03g00303 1247 SFLD Haloacid Dehalogenase 485 1001 - -
Cmo03g00303 1247 Gene3D - 498 510 IPR023214 -
Cmo03g00303 1247 CDD P-type_ATPase_APLT_Dnf-like 131 1110 - -
Cmo03g00303 1247 Gene3D - 511 528 IPR023299 GO:0000166
Cmo03g00303 1247 Gene3D - 768 990 IPR023214 -
Cmo03g00303 1247 Gene3D - 613 751 IPR023299 GO:0000166
Cmo03g00303 1247 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 104 1242 - -
Cmo03g00303 1247 SUPERFAMILY HAD-like 496 996 IPR036412 -
Cmo03g00303 1247 SFLD p-type atpase 485 1001 IPR044492 -
Cmo03g00303 1247 Pfam haloacid dehalogenase-like hydrolase 846 967 - -
Cmo03g00303 1247 SUPERFAMILY Calcium ATPase, transmembrane domain M 129 1217 IPR023298 -
Cmo03g00303 1247 MobiDBLite consensus disorder prediction 861 876 - -
Cmo03g00303 1247 Pfam Phospholipid-translocating ATPase N-terminal 115 180 IPR032631 -
Cmo03g00303 1247 MobiDBLite consensus disorder prediction 855 876 - -
Cmo03g00303 1247 Gene3D - 481 497 - -
Cmo03g00303 1247 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 129 1225 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00303 Cmo07g01262 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00303 Cmo-Chr3:4214054 Cmo15g00548 Cmo-Chr15:2610755 0 dispersed
Cmo18g01081 Cmo-Chr18:11365450 Cmo03g00303 Cmo-Chr3:4214054 0 dispersed
Cmo03g00303 Cmo-Chr3:4214054 Cmo07g01262 Cmo-Chr7:6898040 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00303 K14802 - csv:101206692 2251.86