Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00308 ATGGCACAGCCTTCTGGGTATGCTGAAACAGACCCATCTGGTCGCTATGGACGGTTTAGAGAGATTCTGGGGAAAGGAGCGATGAAGACGGTATACAAAGCCTTTGATGAGGTGCTTGGGATTGAAGTGGCATGGAACCAAGTCCAGCTCAAAGATGTGTTCCATTCCCCTGAGGAACTACAACGTCTCTACTCAGAAGTTCATCTCCTAAAGAACCTCAACCACGACTCGATCATCCGATTCTACGCTTCTTGGATCGATACTCATCGTCGAACCTTCAACTTCATCACCGAAATGTTCACCTCTGGCAGCCTTAGAGAGTACCGACAAAAACATCGAAACATCAATATCGAAGCGATCAAGAACTGGTCTCGACAAATCCTACACGGCCTAGCTTATCTTCATGGACATGATCCTCCTGTAATCCATAGAGATCTTAAATGTGATAACATATTCATCAATGGCCATCTTGGGCAAGTTAAAATTGGTGACTTGGGACTTGCAACTATCCTTCATGATTCTCAACACGCTCATAGTGTCATAGGTACACCCGAGTTCATGGCACCGGAGCTGTATGATGAGGATTATAATGAGCTTGTAGATGTTTATTCCTTTGGAATGTGTTTGATTGAGATGCTCACTTTGGAGTATCCTTATAGCGAGTGCTCCAACCCTGCTCAGATATACAAGAAAGTCACTTCGGGAAAGTTGCCAAATGCGTTCTATGGGATCAAAGACTTGGAGGCCCAAAATTTTGTAAAGAAATGCTTGGAGAATGTTTCAAAGAGGGTGCCTGCCAAAGAGCTCTTGCTTGACCCATTTCTAGCTTCCAATAACAACAATGGCTCTCATCAAGAACACTTCTTGTGTTCATCACAAACTCCAAACAATTCAATGTCAAGAAGGACAGACATGGTCATTTCTGGATCAATGAATCCCAACGACGATACCGTTTTTCTAAAAGTGCATATCAAAGTGAAGAACGGTAAAGCTAAGAACGTACACTTTGCTTTCGACACAATAAACGATACAGCCATCGACGTTGCGACTGAGATGGTTAAAGAGTTGGAAATCGGTGATTGGGATCCGAGTGAGATAGCTATGATGATAAAGAATGAGATATCCACATTGATACCCAATTGGGAGGAGTATCATCAAGATAGCTTCAACTATGATGAACAAGAAGAAGACGGTGGCGACGATGATGAAAGCTACGTAACCCGACATCCTTTCTACTCGTGCTCCTCCCATGCCTCCTCCTCAAATTCTCTTGAGGGTTTCTACTCTTTCTATGAGAATTCCCATCATCATATTTTGGATGGTGTGAATATTGATGATGATGATAAAGGTTCTTCCTTCAATTACTCTGAAGTAAGCTTTTGTTCAATCAATGAAGATGAGTATGGAAGAGATCCTCAATGCATATCAACCACCAAGAACCCTACAAGATTTTGCCCTACCATGAAGATAGACACGCACCATTTGAGGTATAAGGACACTAAAGTAATGGTGGATCGAGAAGCGTTCGAGAGACGATCCCGATCTGATAACTCAGCTAGACTTACGAGGGTGAAGTCAATGGTGAACCTCCGTAGCGAGGCGTTGCACCGATCGTTAGTTGAGATGTTGTTGAAGAAGCGATTGTTTAATACGGTGGATGCCATGGAGAATATTGGATACCAAAAGCCATAG 1692 43.03 MAQPSGYAETDPSGRYGRFREILGKGAMKTVYKAFDEVLGIEVAWNQVQLKDVFHSPEELQRLYSEVHLLKNLNHDSIIRFYASWIDTHRRTFNFITEMFTSGSLREYRQKHRNINIEAIKNWSRQILHGLAYLHGHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLATILHDSQHAHSVIGTPEFMAPELYDEDYNELVDVYSFGMCLIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYGIKDLEAQNFVKKCLENVSKRVPAKELLLDPFLASNNNNGSHQEHFLCSSQTPNNSMSRRTDMVISGSMNPNDDTVFLKVHIKVKNGKAKNVHFAFDTINDTAIDVATEMVKELEIGDWDPSEIAMMIKNEISTLIPNWEEYHQDSFNYDEQEEDGGDDDESYVTRHPFYSCSSHASSSNSLEGFYSFYENSHHHILDGVNIDDDDKGSSFNYSEVSFCSINEDEYGRDPQCISTTKNPTRFCPTMKIDTHHLRYKDTKVMVDREAFERRSRSDNSARLTRVKSMVNLRSEALHRSLVEMLLKKRLFNTVDAMENIGYQKP 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4283942 4287908 + CmoCh03G003080.1 Cmo03g00308 377771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00308 563 SMART serkin_6 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00308 563 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Cmo03g00308 563 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 4 563 - -
Cmo03g00308 563 CDD STKc_WNK 15 275 - -
Cmo03g00308 563 SUPERFAMILY Protein kinase-like (PK-like) 19 305 IPR011009 -
Cmo03g00308 563 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00308 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cmo03g00308 563 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 563 - -
Cmo03g00308 563 Gene3D - 305 384 - -
Cmo03g00308 563 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Cmo03g00308 563 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00308 Cmo-Chr3:4283942 Cmo20g00336 Cmo-Chr20:1658918 0 dispersed
Cmo02g00700 Cmo-Chr2:4415242 Cmo03g00308 Cmo-Chr3:4283942 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74171 PF00069 Pkinase 3.30E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00308 K08867 - csv:101207665 886.33