Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00311 ATGGCGGTTTCTCCCCACTCTTTTCCGCCCAGAAAGCGGCGTCCCTCGGCGGCGGCATTCGTCTCCCCCAAACTCTCCGCCCCTATCCTCCTCGAATCTCTCCTCTCTCTCTGCCATGAAATCTCCGCCATCAAACCGCTTCAATTCATCCTCAAACGCTACTCCATTTCCATGATTCGGAAATCCAGATTACTCCACATTTTTCTCCAAGACCTCCGCCGTAATCCGACGGTTTTGCTTTCCGCCTCCGCCTTGCTCTGCCTTGAAGAAATGTATATCGTTTTGCAAAGAATCAAAACCTTGATTGAAGATTGTTCTAATGGAAGCAAGATGTGGTTACTAACTCAGAACCAATCCATCGCTAACAACTTTCATGAACTCACCTTGGATTTATCGACTCTTCTTGATATCTTCCCTGTTAAGGACGCTGGATTAACCGAAGACGTTGAGGAATTGTTCTTCCTCTTGAGAAATCAGTGCTCCGAATCTGCCGCGTTTCTTGATCCAAGAGATGAAGATCTCCGATTGAGTGTGATGAACACGATCGATCGAATTAAAGATGAAATCGTTCCGGATTGTGCCGAACTGTCAGAGATTTTCTCCATGATCGATATTCGCGATTCGTCGAGTTGTCGTGAGGAAATCGAGAATCTCGAGGACGAAGTTCAGAATCAAACGGATGAGAAATCGAGATCCGATATGATTGCTTTGATCGGATTAGTTCGTTACGCGAAATGCGTTCTGTACGGAGCGTCGACGGCGGAATCTGGATTCCGCCGGAGTGATTCGATCTCGGATTTGCCTGTACCGGCGGATTTCAAGTGTCCGATTAATCTGGATTTAATGCAGGACCCTGTCGTCGTGGCAACAGGTCATACGTACGATCGTGCGGCTATAACGTTGTGGATTGAATCAGGGCACAACACGTGTCCGAAAACAGGTCAGACCTTGGCCCATACGAACCTAATTCCGAACCGGGGATTGAAAAACCTGATTGCAATGTGGTGCCGTCAGGAGAGAATTCCGTTCGATGTAGCGGAAAGCAACAAAGAGAGAGTCAACGGCGTCACGTTAAACAAGGCGGCGTTAGAGGCTATGAGAATGACGGCGTCATTTCTCGTTAAGAAGCTCGCCACGTCAGCAGACTCTTCAGTGAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGAAGCCGTGGGTTCATCGCCCAAGCCGGAGCTGTACCGTTACTCATCCGTTACCTCAACTCTGATAACCCGACTCTGCAAGTTAACGCCGTCACGACGGTGCTAAACCTGTCCATTTTCGAAGCCAATAAATCGTTGATAATGGAAACCGACGGCGCGCTGATCGGAGTCATCGAGGTACTCCGCTCCGGCGCCACTTGGGAAGCAAAAGGGAACGCCGCCGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACCGGCGGAGAATGGGGAGGAAGAGTCGTGTTATCAGGGGACTGCTCGATTTGGCCAAAAACGGGCCGATTAATTCGAAGAGGGATGCTCTGGTGACCATTTTGACACTAGCCAACGACAGGGAGATCGTCGGTCGGTTAATCGAAGGTGGGGTTATGGAGGCGGTGAGCCATCTGATGAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTTAGGAAAGGGGGATTTGTGGCGATTGCTTCTGGTTTTTATGTGATTAAGAAATTAGGCTCTGTTTTGAGAGAGGGCTCCGATAGAGCCAGAGAGAGCGCCGCCGCGGCACTGGTGACAATGTGCAGGCAAGGTGGATCGGAAATGGTGGCGGAGCTGGCGTCTATTGCTGGGATTGAGAGAGTGATTTGGGAATTGATGGGGAGTGGAACCGCGAGAGGGCGGCGAAAGGCGGCGTCGCTGTTGAGAATACTCCGGCGATGGTCAGCAGGTTTGGATGGAAACGGCGGCGCTGGAGTAGAGTCCATGACAATTACTTCGTCGAGAATGGGTGGCGACTCAAACCCCATTGTTAGTTCATCAAGAGGAGCAATTGTGCATGTGTAG 2064 50.68 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLESLLSLCHEISAIKPLQFILKRYSISMIRKSRLLHIFLQDLRRNPTVLLSASALLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNQSIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFFLLRNQCSESAAFLDPRDEDLRLSVMNTIDRIKDEIVPDCAELSEIFSMIDIRDSSSCREEIENLEDEVQNQTDEKSRSDMIALIGLVRYAKCVLYGASTAESGFRRSDSISDLPVPADFKCPINLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRGLKNLIAMWCRQERIPFDVAESNKERVNGVTLNKAALEAMRMTASFLVKKLATSADSSVNDVVYELRVLAKTDPGSRGFIAQAGAVPLLIRYLNSDNPTLQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRMGRKSRVIRGLLDLAKNGPINSKRDALVTILTLANDREIVGRLIEGGVMEAVSHLMNSLPEEAVTILEVVVRKGGFVAIASGFYVIKKLGSVLREGSDRARESAAAALVTMCRQGGSEMVAELASIAGIERVIWELMGSGTARGRRKAASLLRILRRWSAGLDGNGGAGVESMTITSSRMGGDSNPIVSSSRGAIVHV 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4303256 4305319 - CmoCh03G003110.1 Cmo03g00311 377774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00311 687 SUPERFAMILY ARM repeat 371 644 IPR016024 -
Cmo03g00311 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 661 - -
Cmo03g00311 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Cmo03g00311 687 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Cmo03g00311 687 Gene3D - 367 645 IPR011989 -
Cmo03g00311 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 348 IPR013083 -
Cmo03g00311 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Cmo03g00311 687 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Cmo03g00311 687 PANTHER U BOX DOMAIN-CONTAINING 11 661 - -
Cmo03g00311 687 CDD RING-Ubox_PUB 273 315 IPR045210 -
Cmo03g00311 687 Gene3D - 51 140 IPR036537 GO:0007166
Cmo03g00311 687 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Cmo03g00311 687 Coils Coil 208 235 - -
Cmo03g00311 687 SUPERFAMILY RING/U-box 259 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00311 Cmo07g01269 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00311 Cmo-Chr3:4303256 Cmo18g00411 Cmo-Chr18:2697402 4.31E-133 dispersed
Cmo03g00311 Cmo-Chr3:4303256 Cmo07g01269 Cmo-Chr7:6957282 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00311 - - csv:101205143 1157.51