Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00313 | ATGCCGCCGTTCGACGACAATCCTCCGCCGCGACTCGCCCGCGGCGACTCTTTGCCGGAAGGAATTCTGTTCGGAAAATACGAACTCGGTAAGCTATTAGGATGTGGAGCTTTTGCGAAGGTCTACCATGGCAGAAACGTTCTTACTGGACAGAGCGTCGCGATTAAGATCGTTAACAAACTCAAAGTCCTCAAAGGCGGTTTCAAGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGTCATCCGAACGTCGTTCGTCTGTTTGAAGTTCTAGCAACGAAGACGAAGATTTATTTCGTGATGGAGTTTGCGAAAGGAGGAGAGCTCTTTGGTAAAGTTTCCAAGGGACGGTTTAGTGAGAATCTTAGCCGTCGGTATTTTCAGCAGTTAATCACCGCCGTTGGATATTGTCACTCCCAAGGTATTTTTCATCGTGATTTGAAACCGGAGAATCTTCTTCTCGATGATAATTTCGATCTTCGAGTTTCGGATTTTGGACTTAGTGCTCTCACCGATCAGATTCGTCCCGACGGATTGCTTCATACTCTCTGTGGAACTCCGGCTTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGAGCCAAAATCGACGTCTGGTCCTGCGGGATTATCCTCTATGTTCTTACCACTGGATACCTTCCGTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGCCCTAAATGGACCTCGCCAGATCTGCGGCGGTTTCTCTCGAGGCTTCTGGATACGAATCCGGAGACGAGGATTACCGTCGATGAGATTCATCAAGATCCGTGGTTCGTGAAGGGATTTCAGGAGGAGAAGCTTCAAATCGACGATTCCGCTTCAGAGATTTACGGTGATGTGAACAATGCGAAATGTTTGAATGCTTTCGATCTAATTTCCTTCTCACCTGGCTTCGATTTGACTGGATTAATCAACGAAACGGAATTTTCCTCTGGCGTTGAGCGCTTTCTCTCCGCCGAATCGCCGGAGAAGATTATAGTGACGGTTGAGGAAGCTTCGAAGTCGGAGAATGCAGCGGTGGAGAAAAACGGCTGGGGAGCTAAAGTGGAGGGTCTCGACGGCGGGTTCATCGCCGTTATTGATATTTTCCGGCTGACGGAGGAATTAGTGGTGGTTGAGATTAAAAACAGAGTAAGGGAAGTAGATCAAGACGGTCAGATTTGGAAAGATATATTGAGACCTCAACTAGAATGTTTGATCTACCGGTCGGAGTGA | 1284 | 48.21 | MPPFDDNPPPRLARGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVLTGQSVAIKIVNKLKVLKGGFKAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFGKVSKGRFSENLSRRYFQQLITAVGYCHSQGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFVKGFQEEKLQIDDSASEIYGDVNNAKCLNAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEASKSENAAVEKNGWGAKVEGLDGGFIAVIDIFRLTEELVVVEIKNRVREVDQDGQIWKDILRPQLECLIYRSE | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4316184 | 4317467 | + | CmoCh03G003130.1 | Cmo03g00313 | 377776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00313 | 427 | ProSiteProfiles | Protein kinase domain profile. | 27 | 281 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g00313 | 427 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo03g00313 | 427 | ProSiteProfiles | NAF domain profile. | 304 | 328 | IPR018451 | GO:0007165 | |
Cmo03g00313 | 427 | CDD | CIPK_C | 310 | 419 | - | - | |
Cmo03g00313 | 427 | ProSitePatterns | Protein kinases ATP-binding region signature. | 33 | 56 | IPR017441 | GO:0005524 | |
Cmo03g00313 | 427 | SMART | serkin_6 | 27 | 281 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g00313 | 427 | Gene3D | Transferase(Phosphotransferase) domain 1 | 21 | 309 | - | - | |
Cmo03g00313 | 427 | Pfam | NAF domain | 307 | 365 | IPR004041 | GO:0007165 | |
Cmo03g00313 | 427 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 | 20 | 425 | - | - | |
Cmo03g00313 | 427 | PANTHER | - | 20 | 425 | - | - | |
Cmo03g00313 | 427 | SUPERFAMILY | Protein kinase-like (PK-like) | 23 | 290 | IPR011009 | - | |
Cmo03g00313 | 427 | Pfam | Protein kinase domain | 27 | 281 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g00313 | 427 | Gene3D | Kinase associated domain 1, KA1 | 310 | 425 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00313 | Cmo07g01270 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00313 | Cmo-Chr3:4316184 | Cmo20g00338 | Cmo-Chr20:1665343 | 1.60E-176 | dispersed | |
Cmo02g00704 | Cmo-Chr2:4428434 | Cmo03g00313 | Cmo-Chr3:4316184 | 0 | wgd | |
Cmo03g00313 | Cmo-Chr3:4316184 | Cmo07g01270 | Cmo-Chr7:6968245 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74172 | PF00069 | Pkinase | 5.80E-71 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00313 | - | K12761 | csv:116403168 | 795.038 |