Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00313 ATGCCGCCGTTCGACGACAATCCTCCGCCGCGACTCGCCCGCGGCGACTCTTTGCCGGAAGGAATTCTGTTCGGAAAATACGAACTCGGTAAGCTATTAGGATGTGGAGCTTTTGCGAAGGTCTACCATGGCAGAAACGTTCTTACTGGACAGAGCGTCGCGATTAAGATCGTTAACAAACTCAAAGTCCTCAAAGGCGGTTTCAAGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGTCATCCGAACGTCGTTCGTCTGTTTGAAGTTCTAGCAACGAAGACGAAGATTTATTTCGTGATGGAGTTTGCGAAAGGAGGAGAGCTCTTTGGTAAAGTTTCCAAGGGACGGTTTAGTGAGAATCTTAGCCGTCGGTATTTTCAGCAGTTAATCACCGCCGTTGGATATTGTCACTCCCAAGGTATTTTTCATCGTGATTTGAAACCGGAGAATCTTCTTCTCGATGATAATTTCGATCTTCGAGTTTCGGATTTTGGACTTAGTGCTCTCACCGATCAGATTCGTCCCGACGGATTGCTTCATACTCTCTGTGGAACTCCGGCTTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGAGCCAAAATCGACGTCTGGTCCTGCGGGATTATCCTCTATGTTCTTACCACTGGATACCTTCCGTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGCCCTAAATGGACCTCGCCAGATCTGCGGCGGTTTCTCTCGAGGCTTCTGGATACGAATCCGGAGACGAGGATTACCGTCGATGAGATTCATCAAGATCCGTGGTTCGTGAAGGGATTTCAGGAGGAGAAGCTTCAAATCGACGATTCCGCTTCAGAGATTTACGGTGATGTGAACAATGCGAAATGTTTGAATGCTTTCGATCTAATTTCCTTCTCACCTGGCTTCGATTTGACTGGATTAATCAACGAAACGGAATTTTCCTCTGGCGTTGAGCGCTTTCTCTCCGCCGAATCGCCGGAGAAGATTATAGTGACGGTTGAGGAAGCTTCGAAGTCGGAGAATGCAGCGGTGGAGAAAAACGGCTGGGGAGCTAAAGTGGAGGGTCTCGACGGCGGGTTCATCGCCGTTATTGATATTTTCCGGCTGACGGAGGAATTAGTGGTGGTTGAGATTAAAAACAGAGTAAGGGAAGTAGATCAAGACGGTCAGATTTGGAAAGATATATTGAGACCTCAACTAGAATGTTTGATCTACCGGTCGGAGTGA 1284 48.21 MPPFDDNPPPRLARGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVLTGQSVAIKIVNKLKVLKGGFKAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFGKVSKGRFSENLSRRYFQQLITAVGYCHSQGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFVKGFQEEKLQIDDSASEIYGDVNNAKCLNAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEASKSENAAVEKNGWGAKVEGLDGGFIAVIDIFRLTEELVVVEIKNRVREVDQDGQIWKDILRPQLECLIYRSE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4316184 4317467 + CmoCh03G003130.1 Cmo03g00313 377776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00313 427 ProSiteProfiles Protein kinase domain profile. 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00313 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cmo03g00313 427 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Cmo03g00313 427 CDD CIPK_C 310 419 - -
Cmo03g00313 427 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Cmo03g00313 427 SMART serkin_6 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00313 427 Gene3D Transferase(Phosphotransferase) domain 1 21 309 - -
Cmo03g00313 427 Pfam NAF domain 307 365 IPR004041 GO:0007165
Cmo03g00313 427 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 20 425 - -
Cmo03g00313 427 PANTHER - 20 425 - -
Cmo03g00313 427 SUPERFAMILY Protein kinase-like (PK-like) 23 290 IPR011009 -
Cmo03g00313 427 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00313 427 Gene3D Kinase associated domain 1, KA1 310 425 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00313 Cmo07g01270 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00313 Cmo-Chr3:4316184 Cmo20g00338 Cmo-Chr20:1665343 1.60E-176 dispersed
Cmo02g00704 Cmo-Chr2:4428434 Cmo03g00313 Cmo-Chr3:4316184 0 wgd
Cmo03g00313 Cmo-Chr3:4316184 Cmo07g01270 Cmo-Chr7:6968245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74172 PF00069 Pkinase 5.80E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00313 - K12761 csv:116403168 795.038