Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00316 ATGGAGAACAAAGGGGCTATCTTGATGCAACGTTATGAATTAGGAAGGCTTCTGGGGCAGGGAACCTTTGCCAAGGTTTACCATGCTAGAGACATTAAAACTGGTGTGAGTGTGGCTATTAAAGTTATTGACAAGGAGAAGATCTTGAAGGTTGGGATGATCGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACGTAGTTGAGCTATATGAGGTTATGGCAACCAAAACTAAAATTTACTTTGTCATGGAATATGTCAAAGGGGGTGAGCTATTCAACAAGGTATCCAAGGGAAAGCTTAAAGAAGCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTCGATTATTGCCACAGTAGAGGAATATGCCATCGAGATTTGAAACCGGAAAACTTACTGTTGGATGAACATGGTAACTTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCCGAATCTAAACGCCAAGATGGATTGCTCCATACTACCTGTGGAACCCCTGCTTATGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCGTGTGGAGTGATTTTATTCGTTCTATTGGCTGGTTATCTCCCATTCCATGATTCTAATCTAATGGAGATGTATAAGAAGATTGGGAAAGGAGAATTTAAATTCCCCAACTGGTTTGCCCCAGAGGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATTACTATTGCCAAAATAATGGGAAGTTCTTGGCTAAGGAGGGAGAGTGTGAAACCAAAAATTAATACCGAAGACGTGAAAGAAGTTGCTCCTTTGGATGTCGATACAGTTTTCGTGTCTACGACCGAGGACAGGGATTCTGTCAGAGAGCTGAAGCAAGAAGTGGGAAAGCCATTGAATATGAACGCGTTCGACATAATCTCCTTGTCGTCAGGTTTCGATTTGTCAGGATTGTTCGAGGAGAATAATCAAAAGAAAGAAGTAAGATTCACATCGAACGAGTCTGCATCCACCATCATCTCTAAACTGCAAGACATTGCAAAGTGCCTGAAATTGAAAATCAAGAAGAAAGACAAAGGCGTACTGAAGATCGAAGGGTGCAAGGAAGGTCGAAAAGGAGCTGTATGTATTGATGCAGAGATTTTCGAGGTCACCCCATCATTCCATATTGTCGAAATGAAGAAGTCAAACGGAGATACTCTGGAATATCATAAGTTAATGAAAGACGATATAAGACCCGCCCTGAAGGACATTGTCTGGACCTGGCAAGGCGAGCAGCAACATAGACAGCTACCACAAGCAGAACAACAATGTCGAGAAGAAGCGCAACAACAGTCTTGTACCGATCAATTATATAACACGGGACTGTTGGAGGCTTCTCCTTAA 1428 42.3 MENKGAILMQRYELGRLLGQGTFAKVYHARDIKTGVSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNVVELYEVMATKTKIYFVMEYVKGGELFNKVSKGKLKEAVARKYFWQLISAVDYCHSRGICHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFAPEVRKLLSKILDPNPNTRITIAKIMGSSWLRRESVKPKINTEDVKEVAPLDVDTVFVSTTEDRDSVRELKQEVGKPLNMNAFDIISLSSGFDLSGLFEENNQKKEVRFTSNESASTIISKLQDIAKCLKLKIKKKDKGVLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYHKLMKDDIRPALKDIVWTWQGEQQHRQLPQAEQQCREEAQQQSCTDQLYNTGLLEASP 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4336478 4337905 - CmoCh03G003160.1 Cmo03g00316 377779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00316 475 CDD CIPK_C 316 430 - -
Cmo03g00316 475 Gene3D Phosphorylase Kinase; domain 1 8 93 - -
Cmo03g00316 475 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00316 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cmo03g00316 475 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00316 475 Gene3D Kinase associated domain 1, KA1 310 435 - -
Cmo03g00316 475 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00316 475 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 449 - -
Cmo03g00316 475 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cmo03g00316 475 Pfam NAF domain 312 370 IPR004041 GO:0007165
Cmo03g00316 475 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cmo03g00316 475 Gene3D Transferase(Phosphotransferase) domain 1 94 284 - -
Cmo03g00316 475 CDD STKc_SnRK3 11 265 - -
Cmo03g00316 475 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Cmo03g00316 475 PANTHER - 2 449 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00316 Cmo07g01272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00316 Cmo-Chr3:4336478 Cmo13g00625 Cmo-Chr13:6757756 0 dispersed
Cmo03g01327 Cmo-Chr3:9900418 Cmo03g00316 Cmo-Chr3:4336478 1.89E-177 dispersed
Cmo07g00176 Cmo-Chr7:930218 Cmo03g00316 Cmo-Chr3:4336478 1.32E-178 dispersed
Cmo08g01091 Cmo-Chr8:7004141 Cmo03g00316 Cmo-Chr3:4336478 4.28E-133 dispersed
Cmo14g00107 Cmo-Chr14:492559 Cmo03g00316 Cmo-Chr3:4336478 7.53E-49 dispersed
Cmo02g00706 Cmo-Chr2:4431875 Cmo03g00316 Cmo-Chr3:4336478 0 wgd
Cmo03g00316 Cmo-Chr3:4336478 Cmo07g01272 Cmo-Chr7:6994481 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74173 PF00069 Pkinase 8.10E-77 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00316 K07198 - csv:101209068 790.415