Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00316 | ATGGAGAACAAAGGGGCTATCTTGATGCAACGTTATGAATTAGGAAGGCTTCTGGGGCAGGGAACCTTTGCCAAGGTTTACCATGCTAGAGACATTAAAACTGGTGTGAGTGTGGCTATTAAAGTTATTGACAAGGAGAAGATCTTGAAGGTTGGGATGATCGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACGTAGTTGAGCTATATGAGGTTATGGCAACCAAAACTAAAATTTACTTTGTCATGGAATATGTCAAAGGGGGTGAGCTATTCAACAAGGTATCCAAGGGAAAGCTTAAAGAAGCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTCGATTATTGCCACAGTAGAGGAATATGCCATCGAGATTTGAAACCGGAAAACTTACTGTTGGATGAACATGGTAACTTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCCGAATCTAAACGCCAAGATGGATTGCTCCATACTACCTGTGGAACCCCTGCTTATGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCGTGTGGAGTGATTTTATTCGTTCTATTGGCTGGTTATCTCCCATTCCATGATTCTAATCTAATGGAGATGTATAAGAAGATTGGGAAAGGAGAATTTAAATTCCCCAACTGGTTTGCCCCAGAGGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATTACTATTGCCAAAATAATGGGAAGTTCTTGGCTAAGGAGGGAGAGTGTGAAACCAAAAATTAATACCGAAGACGTGAAAGAAGTTGCTCCTTTGGATGTCGATACAGTTTTCGTGTCTACGACCGAGGACAGGGATTCTGTCAGAGAGCTGAAGCAAGAAGTGGGAAAGCCATTGAATATGAACGCGTTCGACATAATCTCCTTGTCGTCAGGTTTCGATTTGTCAGGATTGTTCGAGGAGAATAATCAAAAGAAAGAAGTAAGATTCACATCGAACGAGTCTGCATCCACCATCATCTCTAAACTGCAAGACATTGCAAAGTGCCTGAAATTGAAAATCAAGAAGAAAGACAAAGGCGTACTGAAGATCGAAGGGTGCAAGGAAGGTCGAAAAGGAGCTGTATGTATTGATGCAGAGATTTTCGAGGTCACCCCATCATTCCATATTGTCGAAATGAAGAAGTCAAACGGAGATACTCTGGAATATCATAAGTTAATGAAAGACGATATAAGACCCGCCCTGAAGGACATTGTCTGGACCTGGCAAGGCGAGCAGCAACATAGACAGCTACCACAAGCAGAACAACAATGTCGAGAAGAAGCGCAACAACAGTCTTGTACCGATCAATTATATAACACGGGACTGTTGGAGGCTTCTCCTTAA | 1428 | 42.3 | MENKGAILMQRYELGRLLGQGTFAKVYHARDIKTGVSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNVVELYEVMATKTKIYFVMEYVKGGELFNKVSKGKLKEAVARKYFWQLISAVDYCHSRGICHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFAPEVRKLLSKILDPNPNTRITIAKIMGSSWLRRESVKPKINTEDVKEVAPLDVDTVFVSTTEDRDSVRELKQEVGKPLNMNAFDIISLSSGFDLSGLFEENNQKKEVRFTSNESASTIISKLQDIAKCLKLKIKKKDKGVLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYHKLMKDDIRPALKDIVWTWQGEQQHRQLPQAEQQCREEAQQQSCTDQLYNTGLLEASP | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4336478 | 4337905 | - | CmoCh03G003160.1 | Cmo03g00316 | 377779 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00316 | 475 | CDD | CIPK_C | 316 | 430 | - | - | |
Cmo03g00316 | 475 | Gene3D | Phosphorylase Kinase; domain 1 | 8 | 93 | - | - | |
Cmo03g00316 | 475 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g00316 | 475 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo03g00316 | 475 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g00316 | 475 | Gene3D | Kinase associated domain 1, KA1 | 310 | 435 | - | - | |
Cmo03g00316 | 475 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g00316 | 475 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 | 2 | 449 | - | - | |
Cmo03g00316 | 475 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 267 | IPR011009 | - | |
Cmo03g00316 | 475 | Pfam | NAF domain | 312 | 370 | IPR004041 | GO:0007165 | |
Cmo03g00316 | 475 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524 | |
Cmo03g00316 | 475 | Gene3D | Transferase(Phosphotransferase) domain 1 | 94 | 284 | - | - | |
Cmo03g00316 | 475 | CDD | STKc_SnRK3 | 11 | 265 | - | - | |
Cmo03g00316 | 475 | ProSiteProfiles | NAF domain profile. | 310 | 334 | IPR018451 | GO:0007165 | |
Cmo03g00316 | 475 | PANTHER | - | 2 | 449 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00316 | Cmo07g01272 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00316 | Cmo-Chr3:4336478 | Cmo13g00625 | Cmo-Chr13:6757756 | 0 | dispersed | |
Cmo03g01327 | Cmo-Chr3:9900418 | Cmo03g00316 | Cmo-Chr3:4336478 | 1.89E-177 | dispersed | |
Cmo07g00176 | Cmo-Chr7:930218 | Cmo03g00316 | Cmo-Chr3:4336478 | 1.32E-178 | dispersed | |
Cmo08g01091 | Cmo-Chr8:7004141 | Cmo03g00316 | Cmo-Chr3:4336478 | 4.28E-133 | dispersed | |
Cmo14g00107 | Cmo-Chr14:492559 | Cmo03g00316 | Cmo-Chr3:4336478 | 7.53E-49 | dispersed | |
Cmo02g00706 | Cmo-Chr2:4431875 | Cmo03g00316 | Cmo-Chr3:4336478 | 0 | wgd | |
Cmo03g00316 | Cmo-Chr3:4336478 | Cmo07g01272 | Cmo-Chr7:6994481 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74173 | PF00069 | Pkinase | 8.10E-77 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00316 | K07198 | - | csv:101209068 | 790.415 |