Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00330 ATGGGAGCCTGCTGCACAAAAGATCACATCCATGGAGGAGGCTACATGACCTATGATAGAGATGAGAGGGATTCCAATGCCGGCGACGACGGAGAAGAGGTCCGACGCGGTGACGACGGCGAGACTGTTAGACTCCGTGGATCCTCTGCCTTCACATCAATGTTCACTCAACGAGGAAGAAAAGGAGTCAATCAAGATTCAATGACGATTTGGGAGGATTTCTCAGGGGAGAAAGATTTGGTGTTTTGTGGAGTTTTTGATGGTCATGGTCCTTCTGGTCATAGGGTTGCTCGTTATGCACGAGATGTGCTACCCACGAAGCTCTCTAAAGCAATCAAAAAACACCCATCGAAACCCGAAGATGGATTGGTTTCTATTTGGGAAGCTGCTTTTGAAGAATCTTTCAAAGAATTTGATCAAGAACTCGGCTATGATTCTTCTATTGATTGTTTCTGTAGTGGAGCAACAGCCGTGACCATTATCAAACAGGGAGAGCATTTGGTGGTGGCTAACTTGGGTGACTCCCGGGCGGTTCTCTGCACCAGAGGAGATAAACATCAACATATTCCCATCCAATTAACAGTCGATCACAAACCAAATATTCCATGCGAGGCAGAAAGAATACACAACAGCCATGGCAGAATCACAGCAGAAAAAGAAGACCCAGATATACACAGAGTATGGGTACCAGATGCAGATTACCCAGGCCTGGCCATGTCAAGATCCTTAGGCGATTTTTGCCTAAAAGATTATGGCGTTATCTCAAACCCTCAAATCTCCTACAGAAATCTCACAAGAAAAGACGAGTTCATCGTTCTAGCAACAGATGGGGTATGGGATGTGTTGACGAACAAGCAAGTAATCAACATAGTTGCATCAGCAAAGAACCGATCCACGGCAGCGAAATTGGTAGTGAAACTAGCAGTTCGAGAATGGAAACGGCGATTTCCAGGGTCGATGATCGACGATTGTGCAGTGATTTGCGTGTTCTTCAAGAACCCACCAATGTTGATGAAATCAATGACGAGCGTGGGGCGGCGGAACGTGAGAAGCCACCCAGAATTTGCAGTTTCAAGAAGCTGTAAATCAATGGGGAATGATAGAACAAGAGAAGAAGCAGGTGGGTCTGTGAACAGAGATTCTTCCAAGGAAGAGCAGGGAATTTGCAGAAGCAATTCACTGACGAGAGGTCCGCCATTTTCGAGGGCTTTGAGCCATAATCTGAAAATGGGTAAGTCTTGTCGTGAAGTTGAAGCATGTTGA 1263 45.92 MGACCTKDHIHGGGYMTYDRDERDSNAGDDGEEVRRGDDGETVRLRGSSAFTSMFTQRGRKGVNQDSMTIWEDFSGEKDLVFCGVFDGHGPSGHRVARYARDVLPTKLSKAIKKHPSKPEDGLVSIWEAAFEESFKEFDQELGYDSSIDCFCSGATAVTIIKQGEHLVVANLGDSRAVLCTRGDKHQHIPIQLTVDHKPNIPCEAERIHNSHGRITAEKEDPDIHRVWVPDADYPGLAMSRSLGDFCLKDYGVISNPQISYRNLTRKDEFIVLATDGVWDVLTNKQVINIVASAKNRSTAAKLVVKLAVREWKRRFPGSMIDDCAVICVFFKNPPMLMKSMTSVGRRNVRSHPEFAVSRSCKSMGNDRTREEAGGSVNRDSSKEEQGICRSNSLTRGPPFSRALSHNLKMGKSCREVEAC 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4439194 4441754 + CmoCh03G003300.1 Cmo03g00330 377793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00330 420 MobiDBLite consensus disorder prediction 15 38 - -
Cmo03g00330 420 ProSiteProfiles PPM-type phosphatase domain profile. 51 331 IPR001932 -
Cmo03g00330 420 Gene3D - 41 333 IPR036457 -
Cmo03g00330 420 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 378 - -
Cmo03g00330 420 SUPERFAMILY PP2C-like 49 334 IPR036457 -
Cmo03g00330 420 PANTHER ALPHABET, ISOFORM E-RELATED 1 378 - -
Cmo03g00330 420 SMART PP2C_4 41 329 IPR001932 -
Cmo03g00330 420 MobiDBLite consensus disorder prediction 364 386 - -
Cmo03g00330 420 CDD PP2Cc 53 331 IPR001932 -
Cmo03g00330 420 Pfam Protein phosphatase 2C 71 309 IPR001932 -
Cmo03g00330 420 MobiDBLite consensus disorder prediction 360 402 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00330 Cmo07g01285 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00330 Cmo-Chr3:4439194 Cmo05g00859 Cmo-Chr5:5570993 2.31E-108 dispersed
Cmo14g01709 Cmo-Chr14:13411004 Cmo03g00330 Cmo-Chr3:4439194 3.20E-30 dispersed
Cmo17g00274 Cmo-Chr17:1648265 Cmo03g00330 Cmo-Chr3:4439194 3.26E-30 dispersed
Cmo03g00330 Cmo-Chr3:4439194 Cmo07g01285 Cmo-Chr7:7102504 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00330 - - csv:101209063 662.529