Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00335 ATGATCTTAAGTTTAGGCAGTAGTTTGTTTGGGGAATATCAAGCTATAATGAGTTGCCCCCACAACCTTTGCTGTGTGTTTGTTATAAAACCCCTTCTCCTTCCCTTTCCTTCTCCTTTGCTTCTCTTCTCTCCTGAAACTCTCAAAATTTTACTTGTAAGATCAGTAAGTTGCAAACAGAAACAAGAGGCCACCGAAGTGTTGCAATCAGTGAGGAGTTTGAAGCGCATGACGTCTGAGAATTCTAATGGAGAAAAGATATCAAGAAAGAGGCGAAATGGGTTTGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAATTGAATAATCAATTGGAGTTTTTGGCCAAAGATGGAGTAGAGGAAGTTCGTAGAGTTCCAGCCAAGGGCTCCAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCGCAGAATTCGGACTGTAATTTCAGAGGTGTTAGGCAGAGGACTTGGGGCAAGTGGGTGGCTGAGATTAGAGAGCCTATTGCTAGCAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGTACCTTTGCCACTGCTCACCAGGCTGCTGTTGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCTTTTGCTCGTCTCAATTTTCCCGACGACTCTTCTTCTTTGAAACCAGTAACAGCAGAGCATTCGGACACGGTATCCCCTGTTGCTTCTTCATCTTCTTCCTCTTCCTTCTTAAATGGAGTATCTGCAGAGAAACTGAACTGTGAGTATGAATCAATGGAGGAACCGAAAGTGAAAGTGGAAGAAACAGCAAGAAATGGAGTCAATTATACAGATGCTAATCCCAATTCTGTTTATGATTCTAACAACATTGGGAACAGATCAACAGAAGGAGATATCAAGGATGGATTAGCTGATGTTGTAAGAAGCCATGATATTAATAAATACAGCCAAGATCAGAATGATCCTTCTGAGCTTTGTTTCAAATTTGAAGCAATGGATACAAATGGCTACAATGACATCAACGATTGCAATCAATATTTGCTACAGAAGCTTCAGAGTGATGCATATGCAAGAAGAACTTACTGGATTCCAGCGGAATGGGAGGTCGGCGGTCTCGGGCCGACGACGAAGGTGATGGAAGGAAAGGGAACGGAGATGGAGAGCTATGTAGACTGTATGGACTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGATCAGAGAGTTGATGATTGTAACTTCGAGTTCTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAAAGGAAATGGCTTGATTCATGCTTCCATGGATGA 1338 43.12 MILSLGSSLFGEYQAIMSCPHNLCCVFVIKPLLLPFPSPLLLFSPETLKILLVRSVSCKQKQEATEVLQSVRSLKRMTSENSNGEKISRKRRNGFVSVVDTLNKWKKLNNQLEFLAKDGVEEVRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAAVAYDEAAKAMYGPFARLNFPDDSSSLKPVTAEHSDTVSPVASSSSSSSFLNGVSAEKLNCEYESMEEPKVKVEETARNGVNYTDANPNSVYDSNNIGNRSTEGDIKDGLADVVRSHDINKYSQDQNDPSELCFKFEAMDTNGYNDINDCNQYLLQKLQSDAYARRTYWIPAEWEVGGLGPTTKVMEGKGTEMESYVDCMDFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDSCFHG 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4461152 4464658 + CmoCh03G003350.1 Cmo03g00335 377798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00335 445 MobiDBLite consensus disorder prediction 274 297 - -
Cmo03g00335 445 Pfam AP2 domain 147 206 IPR001471 GO:0003700|GO:0006355
Cmo03g00335 445 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 78 345 - -
Cmo03g00335 445 CDD AP2 147 216 IPR001471 GO:0003700|GO:0006355
Cmo03g00335 445 ProSiteProfiles AP2/ERF domain profile. 148 214 IPR001471 GO:0003700|GO:0006355
Cmo03g00335 445 Gene3D AP2/ERF domain 148 215 IPR036955 GO:0003700|GO:0006355
Cmo03g00335 445 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 78 345 - -
Cmo03g00335 445 MobiDBLite consensus disorder prediction 274 295 - -
Cmo03g00335 445 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Cmo03g00335 445 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700|GO:0006355
Cmo03g00335 445 SUPERFAMILY DNA-binding domain 148 215 IPR016177 GO:0003677
Cmo03g00335 445 SMART rav1_2 148 220 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02000 Cmo-Chr1:14118065 Cmo03g00335 Cmo-Chr3:4461152 7.62E-33 dispersed
Cmo03g00335 Cmo-Chr3:4461152 Cmo05g00279 Cmo-Chr5:1199948 1.06E-32 dispersed
Cmo20g00602 Cmo-Chr20:2956077 Cmo03g00335 Cmo-Chr3:4461152 1.32E-49 transposed
Cmo15g00160 Cmo-Chr15:737528 Cmo03g00335 Cmo-Chr3:4461152 5.56E-42 wgd
Cmo03g00335 Cmo-Chr3:4461152 Cmo04g03016 Cmo-Chr4:21184855 9.09E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9372 PF00847 AP2 1.10E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00335 - K09286 csv:101215862 567.385