Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00342 ATGGTCGATTTCCACCCCGAAATTTCCGTTTCGCTGCCGACCCACGACGGCCTCTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCCGTCGAACACATGACCATGTTTCCAGTGGACACTCTCAAGACACGCATACAAGCCATCGGCGGATCTTCAACAGTCCGACAAGCACTCGGCTCGATTCTAAAGATGGAAGGTCCAGCCGGGCTGTACAGTGGAATTGGGGCAATGGGTCTCGGTGCAGGACCTGCACACGCCGTCTACTTCTCAGTATATGAATTCTGCAAAGAGGGGTTTTCAGTTGGAAATCTTAACAACTCATTAGCACACGCCATTTCTGGGGTGTGTGCGACGGTGGCGAGCGACGCTGTGATAACGCCGATGGATGTAGTGAAACAGAGGCTGCAGTTGAAGAGCAGTCCTTATAAAGGAGTGGGAGACTGCGTGAGGAGAATTTTGGTTGAGGAAGGAATTGGGGCGCTCTATGCCTCTTATCGGACCACGGTGCTGATGAATGCACCGTACACGGCTGTCCATTTTGCCACTTATGAAGCGGCAAAAAGGGGATTGAAGGAGGTCTCACCGGGAAGTGACAACGACGAGAGGCTGATTGTTCATGCTACAGCCGGAGCAGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAATGCCAGGGAGTATGTGGGTGCGACAGGTTTTCAAGCAGTTCAATTGGGTACGTACTTGGGCGTGTTGTGAAGCAGGACGGCTACAATGGGCTGATGAAGGGATGGATTCCACGGGTGTTTTTCCACGCGCCCGCTGCTGCGATTTGCTGGTCGACCTACGAGGCTTCGAAAACCTTCTTTCAACAGCTCCACCATAGCAACAATTAG 912 52.74 MVDFHPEISVSLPTHDGLYFWQFMIAGSIAGSVEHMTMFPVDTLKTRIQAIGGSSTVRQALGSILKMEGPAGLYSGIGAMGLGAGPAHAVYFSVYEFCKEGFSVGNLNNSLAHAISGVCATVASDAVITPMDVVKQRLQLKSSPYKGVGDCVRRILVEEGIGALYASYRTTVLMNAPYTAVHFATYEAAKRGLKEVSPGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDRFSSSSIGYVLGRVVKQDGYNGLMKGWIPRVFFHAPAAAICWSTYEASKTFFQQLHHSNN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4487298 4488746 - CmoCh03G003420.1 Cmo03g00342 377805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00342 303 PANTHER MITOFERRIN-1-RELATED 3 302 - -
Cmo03g00342 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 192 IPR018108 -
Cmo03g00342 303 Pfam Mitochondrial carrier protein 205 297 IPR018108 -
Cmo03g00342 303 Pfam Mitochondrial carrier protein 19 103 IPR018108 -
Cmo03g00342 303 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Cmo03g00342 303 SUPERFAMILY Mitochondrial carrier 16 289 IPR023395 -
Cmo03g00342 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 294 IPR018108 -
Cmo03g00342 303 PRINTS Mitochondrial carrier protein signature 23 36 IPR002067 GO:0055085
Cmo03g00342 303 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Cmo03g00342 303 PRINTS Mitochondrial carrier protein signature 123 141 IPR002067 GO:0055085
Cmo03g00342 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Cmo03g00342 303 PRINTS Mitochondrial carrier protein signature 36 50 IPR002067 GO:0055085
Cmo03g00342 303 Gene3D Mitochondrial carrier domain 105 303 IPR023395 -
Cmo03g00342 303 PANTHER MITOFERRIN-LIKE 3 302 - -
Cmo03g00342 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 18 101 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00342 Cmo07g01125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00342 Cmo-Chr3:4487298 Cmo20g00352 Cmo-Chr20:1733791 5.56E-157 dispersed
Cmo02g00725 Cmo-Chr2:4581054 Cmo03g00342 Cmo-Chr3:4487298 2.71E-15 wgd
Cmo03g00342 Cmo-Chr3:4487298 Cmo07g01125 Cmo-Chr7:5926574 6.44E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00342 K15113 - csv:101210464 537.339