Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00362 ATGGCTTCCCAATCCGAGCCATGGCTCATGGAAAACGGAACCCTTAAGCGCTTAACCAAGGAGAGTCGCCACGGCCATGGCCGAACTGCCCACAACTTGTCCTCCTCTTCCCTACGCAAAAAGTCCGATTTAACCCTCGTCTCCAAAATCCAATTCGGCTGTCTCCGCAAGTTCCTCATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCCATTCCGCTCGCTATTGTCGCTCAGAGTTTCGGGTTTGGAAGACCGTGGATTTTTGCTTTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTCCTGACCGAGCAAATCGCTTATTTCACCGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGGAATGCGACGGAGCTGATAATTGCAATTCTGGCGCTCACACAAGGAAAGATAGACGTGGTGAAGTTCTCTCTTTTGGGCTCTGTTCTTTCCAACCTTCTTCTTGTTCTTGGCACCTCTCTCTTCTGTGGTGGCATCATTAATAAAGAGCAGAGTTATGACAGAAGGCAAGCGGATGTGAACGCACTGATGCTGATGCTGTCATTACTGTGCCACCTATTGCCGTTATTGTTTGGGTACGCCGCCTCCTCCGCCTCCTCCGCCTCCACGGCCGCCGCCTCCACCCTCCACTTGTCCAGAGCCAGCAGCATTGTAATGCTCGCCGCTTACATTGCTTACTTGGTCTTCCAACTCTGGACTCACCGGACATTATTTGAAACTGAGGAAACCGAAGACGACGACGTTTCTGGAGAAGAGGCAGTGATCGGATTCTGGAGTGCATTTGCATGGCTTGCTGGAATGACACTTCTTATTGCTTTGCTGTCCGAATACGTTGTGAACACAATTGAGGAAGCATCTACTACGTGGGGTTTGTCGGTCAGTTTCCTTAGCATAATCTTGCTCCCTATCGTCGGAAATGCAGCCGAACACGCCGGGGCTATCATATTCGCCTTCAAGAATAAGTTGGACATATCTTTGGGAGTTGCATTGGGATCTGCAACACAAATTGCACTTTTTGTGATTCCACTGTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAACTTTAACCTCATGGAAACGGGGTCGCTTGGGTTGGCCATTATTGCCACGGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTCATTCTTCTCCTCTGCTACATCATCATTGCTGCTTGCTTCTTTGTTTCCAAGACCCAAGAAGAATTGGCCTGGATCGAACGCTTGCCGCCTGCCTGGTGGAACGCTTAG 1332 49.7 MASQSEPWLMENGTLKRLTKESRHGHGRTAHNLSSSSLRKKSDLTLVSKIQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQGKIDVVKFSLLGSVLSNLLLVLGTSLFCGGIINKEQSYDRRQADVNALMLMLSLLCHLLPLLFGYAASSASSASTAAASTLHLSRASSIVMLAAYIAYLVFQLWTHRTLFETEETEDDDVSGEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLILLLCYIIIAACFFVSKTQEELAWIERLPPAWWNA 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4609713 4613688 + CmoCh03G003620.1 Cmo03g00362 377825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00362 443 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 430 - -
Cmo03g00362 443 TIGRFAM cax: calcium/proton exchanger 76 422 IPR004798 GO:0006816|GO:0015369
Cmo03g00362 443 Gene3D - 272 423 IPR044880 -
Cmo03g00362 443 Gene3D - 122 271 IPR044880 -
Cmo03g00362 443 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 430 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cmo03g00362 443 Pfam Sodium/calcium exchanger protein 93 251 IPR004837 GO:0016021|GO:0055085
Cmo03g00362 443 Pfam Sodium/calcium exchanger protein 279 420 IPR004837 GO:0016021|GO:0055085
Cmo03g00362 443 TIGRFAM caca2: calcium/proton exchanger 58 422 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00362 Cmo06g00224 CCT
Cmo03g00362 Cmo06g00224 ECH
Cmo03g00362 Cmo07g01105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00693 Cmo-Chr1:3540076 Cmo03g00362 Cmo-Chr3:4609713 1.70E-18 dispersed
Cmo03g00362 Cmo-Chr3:4609713 Cmo20g00692 Cmo-Chr20:3416859 1.51E-113 dispersed
Cmo03g00362 Cmo-Chr3:4609713 Cmo06g00224 Cmo-Chr6:1201700 0 wgd
Cmo03g00362 Cmo-Chr3:4609713 Cmo07g01105 Cmo-Chr7:5785240 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00362 K07300 - csv:101213857 712.605