Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00383 ATGAAATTCTCGGGGATTTCAGCTCTTTTTATTTGTTTAATTCTCTTTGCTCCGTCGAATTTGATTCACGGTGAGGAGACCAAGAAAAACAAATTTCGGGAACGAGTAGCCACGGATGATGCCCTTGGCTACCCTGAGATAGATGAGGATGCTTTGTTGAATACACAATGCCCAAAGAATTTGGAGCTACGATGGCAAACGGAAGTAAGTTCTAGCGTGTATGCTACCCCCTTGATCGCTGATATTAACAGTGATGGGAAGCTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAAGTTTTAGAAGGTTCTGATGGAGATAAAATGCCAGGGTGGCCTGCTTTCCATCAGTCAACTGTGCACGCTAGTCCTCTTCTATATGATATAGACAAAGATGGTGTGAGGGAAATAGCTTTGGCCACATACAATGGAGAAGTACTCTTTTTCAGGGTGTCAGGATATCTGATGACAGATAAGTTAGAGATACCACGTCGCCGTGTGCGCAAGAATTGGTATGTGAGTCTAAATCCAGATCCAGTGGACCGATCTCATCCAGATGTTCATGATGATCAACTTATCACAGAAGCAATGAATTCAAAATCAACATCTCAAACAAATGGAAGTGTTCCAGAGTTAAACCATACAACCCAGACCTTGATGAATGGAAGTGTGACTGAACTAAATACTTCAGCTACCATACCAAATCAAATGCTGAATGTTTCAGATACCATGAATAACAGTAAGGTGAATGACAGAAAAGTTGAACCAGATATTGTCCTGCCTACAAGCATGACCAATAATGCTTCTATGAATGTTACAACTGGAAATCTCAATGATAAGAATGCAACTGGGACGAGTAGAAGACTTTTGGAAGTTAATGACCCGAAACAATCTGAAGAAGATGGTTCTGGGTCCAAGGCAAATGGTAGTGGAGATGAGCATGTTGCCACAGTTGAAAATGATGAACCTTTAGAAGCAGGGGCTGATCAATCATTTGAGATATTCCGTGAAAATGATGAACTTGCTGATGAGTATAATTATGACTATGATGATTATGTTGATGAATCCATGTGGGGAGATGAGGAGTGGACTGAAGATAAGCATGAAAAAGTGGAGGAATATGTGGATATTGACGCACATTTATTGTGCACTCCTGTCATAGCTGACATAGACAATGATGGGGTATCTGAAATGGTTGTAGCTGTTTCATACTTTTTTGATCACGAGTACTACGATAACCCAGAGCACAAGAAAGAATTGGGTGATCTTGATATTGGGAAATATGTAGCTGGTGCTATTGTTGTTTTCAATCTGGATACAAAGCAAGTGAAGTGGACAGCTGAACTAGACTTGAGCACAGATTCTGCAAACTTTCGTGCTTATATATATTCCTCCCCTACTGTCATTGATTTGGATGGTGATGGGAATCTGGATATTCTTGTTGGAACATCCTATGGCTTGTTCTATGTCTTGGATCATCAAGGCAAGGTGAGAGAAAAATTTCCCCTCGAAATGGCTGATATTCAGGGAGCTGTTGTTGCAGCTGATATCAATGATGATGGAAAAATTGAACTTGTGACTGCTGATACACACGGAAATGTTGCTGCCTGGACTGCTAAAGGTGAAGAAATTTGGGAAAAGAATCTAAAGAGTCTTATACCGCAGGGTCCCTCCATTGGCGATGTCGATGGGGATGGTCATACTGATGTGGTGGTACCAACAGTATCAGGAAATATATATGTTCTGAGTGGCAAGGATGGGTCATTTATTCGTCCTTACCCCTATAGAACCCATGGAAGAGTGATGAATCAAATTCTTCTCGTTGATCTGAATAAACGTAATGACAAAAAGAAGGGACTTACTCTAGCCACATCATCATTTGATGGCTATTTGTATCTCATTGATGGACCTACATCCTGTGCTGATGTTATTGACATTGGCGAGACGTCATATAGCATGGTTCTGGCTGACAATGTTGATGGTGGAGATGACCTTGATCTTATTGTCTCAACCATGAATGGCAATGTTTTCTGTTTTTCAACTCCTGCTCCTCACCATCCCCTCAAGGAATGGAGATCAACCAATCAAGGACGAAACAACGTTGCAACTCGGTACAACCGTGAAGGTGTTTTCATTTCACAGTCCTCTAGAACTTTCCGTGACGAGGAAGGCAAGAACTTCTGGGTCGAGATCGAGATTGTAGACCGTTACAGAAATCCATCTGGGACTCAAGCACCATATAACATCACTACAACCTTGATGGTTCCTGGCAATTACCAGGGAGAAAGGAAAATAAAACAAAACCAGATCTTCAAAGAACCAGGCAAATATAGGATCAAACTTCCAACCGTCAGTGTTAGAACCACAGGCACTGTTTTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCAGATGAGTTCTCCCTCACATTCCACATGTATTATTATAAGCTTCTGAAGTGGCTTCTCGTCCTCCCCATGCTTGGAATGTTTGGTGTACTCATGATCCTTCGCCCGCAAGAGCCCGTTCCATTGCCATCGTTTTCCCGGAACACTAACCTATGA 2571 41.73 MKFSGISALFICLILFAPSNLIHGEETKKNKFRERVATDDALGYPEIDEDALLNTQCPKNLELRWQTEVSSSVYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYLMTDKLEIPRRRVRKNWYVSLNPDPVDRSHPDVHDDQLITEAMNSKSTSQTNGSVPELNHTTQTLMNGSVTELNTSATIPNQMLNVSDTMNNSKVNDRKVEPDIVLPTSMTNNASMNVTTGNLNDKNATGTSRRLLEVNDPKQSEEDGSGSKANGSGDEHVATVENDEPLEAGADQSFEIFRENDELADEYNYDYDDYVDESMWGDEEWTEDKHEKVEEYVDIDAHLLCTPVIADIDNDGVSEMVVAVSYFFDHEYYDNPEHKKELGDLDIGKYVAGAIVVFNLDTKQVKWTAELDLSTDSANFRAYIYSSPTVIDLDGDGNLDILVGTSYGLFYVLDHQGKVREKFPLEMADIQGAVVAADINDDGKIELVTADTHGNVAAWTAKGEEIWEKNLKSLIPQGPSIGDVDGDGHTDVVVPTVSGNIYVLSGKDGSFIRPYPYRTHGRVMNQILLVDLNKRNDKKKGLTLATSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPAPHHPLKEWRSTNQGRNNVATRYNREGVFISQSSRTFRDEEGKNFWVEIEIVDRYRNPSGTQAPYNITTTLMVPGNYQGERKIKQNQIFKEPGKYRIKLPTVSVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLMILRPQEPVPLPSFSRNTNL 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4733130 4739858 - CmoCh03G003830.1 Cmo03g00383 377846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00383 856 Pfam FG-GAP repeat 465 498 IPR013517 -
Cmo03g00383 856 PANTHER - 9 856 IPR045232 -
Cmo03g00383 856 Gene3D - 343 687 IPR015943 GO:0005515
Cmo03g00383 856 SUPERFAMILY Integrin alpha N-terminal domain 53 612 IPR028994 -
Cmo03g00383 856 MobiDBLite consensus disorder prediction 266 323 - -
Cmo03g00383 856 MobiDBLite consensus disorder prediction 266 292 - -
Cmo03g00383 856 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 9 856 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00383 Cmo07g01089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00383 Cmo-Chr3:4733130 Cmo07g01089 Cmo-Chr7:5664956 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00383 - - csv:101209717 1549.64