Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00394 ATGGCGGAAGAGTTGCAGGTCTTCGGTTTCTGGGCAAGCCCCTTCAGCCGCAGAGTGGAGCTTGCTCTGAAGCTCAAAGGCGTCGAATACCAACACATCGAGGAAGACTTACCCCACAACAAGAGCCATTTGCTCCTCCAATACAACCCAATTCACAAGAAGGTTCCTGTCCTCGTCCACCATGGAAAACCCATTTCTGAGTCTCTTGTGATCCTCGAATACATCGATGAAATCTGGAAAAACAACCCCCTGTTGCCCCAAAATCCGTACGAACGAGCTCTGGCTAGGTTTTGGGCTAAGTATATTGAGGACAAGGTTGTGGTTGCGATGCTGAAGGCTGCAAAAGCCAAAATTGAAGACAGGGAAAAGGGGTTGGAGGAAGCAGGGGAGGCGTTGGAACCGCTTGAGAAGGAGCTTGGAAGCAAGAGGTTCTTTGGGGGAGAGAAGATTGGGTTTGTGGATGTTGTTGGCACTGTGGTAGCTTACTGGGCTCCTGCCATTGATGAAGCTGTCGGGATTGAGATGATTGGAAGTGACAGGTTCCCGAATATAAAGAAATGGAGTGAAGAGGTTGTGAATCATGGCGTGGTGAAACAGATTCTGCCGCCAAAAGATAAGCTCGTGCCTTATTTGCGAACTGTTCTAAGCAGGAACTAG 657 49.16 MAEELQVFGFWASPFSRRVELALKLKGVEYQHIEEDLPHNKSHLLLQYNPIHKKVPVLVHHGKPISESLVILEYIDEIWKNNPLLPQNPYERALARFWAKYIEDKVVVAMLKAAKAKIEDREKGLEEAGEALEPLEKELGSKRFFGGEKIGFVDVVGTVVAYWAPAIDEAVGIEMIGSDRFPNIKKWSEEVVNHGVVKQILPPKDKLVPYLRTVLSRN 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4801084 4802143 + CmoCh03G003940.1 Cmo03g00394 377857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00394 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 3 213 IPR045073 -
Cmo03g00394 218 Gene3D Glutaredoxin 1 84 - -
Cmo03g00394 218 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 3 213 - -
Cmo03g00394 218 Coils Coil 108 131 - -
Cmo03g00394 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 210 IPR010987 -
Cmo03g00394 218 SFLD Main (cytGST) 2 213 - -
Cmo03g00394 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cmo03g00394 218 Gene3D - 85 217 - -
Cmo03g00394 218 Pfam Glutathione S-transferase, C-terminal domain 104 193 IPR004046 -
Cmo03g00394 218 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Cmo03g00394 218 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Cmo03g00394 218 CDD GST_N_Tau 5 79 - -
Cmo03g00394 218 SFLD Main.3: Omega- and Tau-like 2 213 IPR045073 -
Cmo03g00394 218 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Cmo03g00394 218 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00394 Cmo-Chr3:4801084 Cmo07g01074 Cmo-Chr7:5557747 1.50E-98 dispersed
Cmo06g01161 Cmo-Chr6:8901168 Cmo03g00394 Cmo-Chr3:4801084 1.42E-14 dispersed
Cmo16g00499 Cmo-Chr16:2411394 Cmo03g00394 Cmo-Chr3:4801084 2.01E-47 dispersed
Cmo03g00394 Cmo-Chr3:4801084 Cmo03g00395 Cmo-Chr3:4803152 7.53E-108 tandem
Cmo03g00394 Cmo-Chr3:4801084 Cmo07g01072 Cmo-Chr7:5533132 8.88E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00394 K00799 - csv:105435246 288.115