Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00395 ATGGCAGAACAGCTTCAAGTGTTCGGTTTCTGGGAAAGTGCCTTCAGTCGCAGAGTGGAGCTAGCTCTCAAACTCAAAGGCATCGAATACCAATACTTCGAGGAAGATTTGCCCCACAACAAGAGCCATTTGCTTCTCCAATACAACCCAATTCACAAAAAGGTCCCTGTTCTTGTCCACAATGGAAACCCCATTTCAGAGTCTCTTGTAATCCTCGAGTACATCGATGAAAATTGGAAAACAAACCCATTATTGCCTCAACATCCCCATGACAGAGCTGTTGCTAGATTCTGGGCTAAGTTCATCGATGACAAGGTTGTGGTGGCGGTAGTGAAGGCTGCTGGAAGCGAAGGAGAAGAGAGAGAGAAGGCTGTGGAGGAGGCAGGGGAGGCATTGGGAGCGCTTGAGAAAGAGCTTGGAAGCAGGACGTTGTTTGGAGGGGAGAGGGTTGGGTTTGTGGATGTTGTTGGGAGTGTGATAGTGGGATGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGGTGCTGAGAAGTGATAAGTTCCCCAATTTGATGAAATGGAGTGAAGAGGTTGCTAAGCATGGCGTGGTGAAGGAGATTCTGCCTCCTAAACATGAGATTGTTGCATTTATGGAAGCTAATTGGAAATTTTGA 654 47.09 MAEQLQVFGFWESAFSRRVELALKLKGIEYQYFEEDLPHNKSHLLLQYNPIHKKVPVLVHNGNPISESLVILEYIDENWKTNPLLPQHPHDRAVARFWAKFIDDKVVVAVVKAAGSEGEEREKAVEEAGEALGALEKELGSRTLFGGERVGFVDVVGSVIVGWVPAIEECFGFEVLRSDKFPNLMKWSEEVAKHGVVKEILPPKHEIVAFMEANWKF 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4803152 4804044 + CmoCh03G003950.1 Cmo03g00395 377858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00395 217 SFLD Main (cytGST) 2 213 - -
Cmo03g00395 217 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Cmo03g00395 217 SUPERFAMILY GST C-terminal domain-like 77 214 IPR036282 -
Cmo03g00395 217 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 212 IPR045073 -
Cmo03g00395 217 CDD GST_C_Tau 89 213 IPR045074 GO:0004364|GO:0006749
Cmo03g00395 217 Gene3D Glutaredoxin 1 84 - -
Cmo03g00395 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cmo03g00395 217 Pfam Glutathione S-transferase, C-terminal domain 105 192 IPR004046 -
Cmo03g00395 217 Gene3D - 85 217 - -
Cmo03g00395 217 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Cmo03g00395 217 CDD GST_N_Tau 5 79 - -
Cmo03g00395 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Cmo03g00395 217 PANTHER GLUTATHIONE S-TRANSFERASE U8 1 212 - -
Cmo03g00395 217 SFLD Main.3: Omega- and Tau-like 2 213 IPR045073 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00395 Cmo-Chr3:4803152 Cmo07g01074 Cmo-Chr7:5557747 1.47E-93 dispersed
Cmo03g00395 Cmo-Chr3:4803152 Cmo03g00404 Cmo-Chr3:4832367 2.13E-91 proximal
Cmo03g00394 Cmo-Chr3:4801084 Cmo03g00395 Cmo-Chr3:4803152 7.53E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00395 K00799 - csv:105435246 306.219