Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00411 | ATGGCGGAGGGTTTTGAACTCTACCATGTCCCACAGCAAAGCAGGCGAGACAAGCTGAGAGTAGGAGTTGGGAGTGGCGCTACTAATAATCCCAATTTCCTTCCTTTATATCATCATCATGGTGGTGGTGGTGGTGGTGGTGATGATGATGATCCCTCTTCTTTAATTTCCCCCGATTTTGATTTTCATCAAAACCCCTCTTTTAATCTTCATAATCATAATCATTACCCTCCCACTCCCACTCCCACTCCCCCGGCTGCTTTCGCCACCGCCGCCCACCATCTCCCCCCGCTCCTCCCCGACCAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTCTTCCCCCGCCCCTCTTCTTACCTCCAAATTCTTGAAGCCAGCTCAGCAGCTACTCCACGACCTATTCCACTACGCCGACAAGTTCCCGCCTGATTCCCCCCTTGTTGACCCTCTTCTTCACAGCTTGGGCGCTGATATTCCCACCGCCGCTCTTCATCATCACCCCACCGACGATGGAATTGAAAGCCGGAGGAGAAAATCTAGGCTTATTACCATGCTCGACGAGGTTTATAGAAGATATAAGCTATACTATCAGCAGATGCAGGCAGTGGTGACAACATTCGAGTACGTTGGTGGGCTTGGCAATGCAGCTCCCTACGTGAACTTAGCCGTGAAAGCTATGTTTAAGCACTTCAGATTCTTAAAGAATGCCATTGCCGACCAGCTCCAATTGAACAAGCAGCATCAGCAGCCGCCGCCGCCTTATAACCCGTATTGTCAAAGATCTATTCACAACAACAGTGGGGGATTCGTGGATCACCAACCCGTTTGGCGCCCGCAGAGAGGCCTCCCCGAGAGTGCTGTCACCGTCCTACGAGCTTGGCTGTTTGAACATTTCCTCCATCCTTATCCTACGGATACCGACAAGCTCATGCTGGCTAACCAGACTGGTCTCTCGCGAAGCCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGGCTATGGAAGCCAATGGTGGAAGAAATCCACATGCTAGAAACAAGGGAAGCTCAGAAATCTCAGCACAGGGACGCCAATAATGGAACTCCCTTAAACAACAACAACAACGACGACCATCTTTCATCCACAAACCAATCATTGAATAACGCATCTTCTTCAAACCATGACCAACACCCACTCCACTTATCCAACTCCAATTTCTTTCCGACCCACCACCCTCACCCGCCTGCCGGAGCCACCACGATGGGCGCCGGCAACGTTTCCTTAACTCTGGGGCTCCACCAGAATCACGGCGGGATCACTCTCACAGAGCCGTTTCCGATCAATGCAGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGGTTTGTAAATGAGTGGTTTTGA | 1407 | 51.03 | MAEGFELYHVPQQSRRDKLRVGVGSGATNNPNFLPLYHHHGGGGGGGDDDDPSSLISPDFDFHQNPSFNLHNHNHYPPTPTPTPPAAFATAAHHLPPLLPDQQPPLSLDLNLQHRYASSPAPLLTSKFLKPAQQLLHDLFHYADKFPPDSPLVDPLLHSLGADIPTAALHHHPTDDGIESRRRKSRLITMLDEVYRRYKLYYQQMQAVVTTFEYVGGLGNAAPYVNLAVKAMFKHFRFLKNAIADQLQLNKQHQQPPPPYNPYCQRSIHNNSGGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETREAQKSQHRDANNGTPLNNNNNDDHLSSTNQSLNNASSSNHDQHPLHLSNSNFFPTHHPHPPAGATTMGAGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4872357 | 4876168 | + | CmoCh03G004110.1 | Cmo03g00411 | 377874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00411 | 468 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 95 | 445 | - | - | |
Cmo03g00411 | 468 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Cmo03g00411 | 468 | SMART | HOX_1 | 282 | 346 | IPR001356 | GO:0003677 | |
Cmo03g00411 | 468 | CDD | homeodomain | 282 | 343 | IPR001356 | GO:0003677 | |
Cmo03g00411 | 468 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 95 | 445 | - | - | |
Cmo03g00411 | 468 | ProSiteProfiles | 'Homeobox' domain profile. | 279 | 342 | IPR001356 | GO:0003677 | |
Cmo03g00411 | 468 | Pfam | Associated with HOX | 123 | 244 | IPR006563 | - | |
Cmo03g00411 | 468 | MobiDBLite | consensus disorder prediction | 361 | 408 | - | - | |
Cmo03g00411 | 468 | MobiDBLite | consensus disorder prediction | 353 | 421 | - | - | |
Cmo03g00411 | 468 | SMART | prehox3 | 117 | 245 | IPR006563 | - | |
Cmo03g00411 | 468 | Pfam | Homeobox KN domain | 299 | 338 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo03g00411 | 468 | Gene3D | - | 285 | 347 | - | - | |
Cmo03g00411 | 468 | SUPERFAMILY | Homeodomain-like | 284 | 348 | IPR009057 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00411 | Cmo14g00104 | CCT | |
Cmo03g00411 | Cmo06g00271 | CCT | |
Cmo03g00411 | Cmo06g00271 | ECH | |
Cmo03g00411 | Cmo14g00104 | ECH | |
Cmo03g00411 | Cmo07g01064 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00411 | Cmo-Chr3:4872357 | Cmo13g00245 | Cmo-Chr13:2012539 | 7.39E-75 | dispersed | |
Cmo14g00104 | Cmo-Chr14:480107 | Cmo03g00411 | Cmo-Chr3:4872357 | 3.92E-08 | wgd | |
Cmo03g00411 | Cmo-Chr3:4872357 | Cmo06g00271 | Cmo-Chr6:1371446 | 2.11E-95 | wgd | |
Cmo03g00411 | Cmo-Chr3:4872357 | Cmo07g01064 | Cmo-Chr7:5426177 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9379 | PF07526 | POX | 1.80E-29 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00411 | - | - | cmos:111453568 | 816.224 |