Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00411 ATGGCGGAGGGTTTTGAACTCTACCATGTCCCACAGCAAAGCAGGCGAGACAAGCTGAGAGTAGGAGTTGGGAGTGGCGCTACTAATAATCCCAATTTCCTTCCTTTATATCATCATCATGGTGGTGGTGGTGGTGGTGGTGATGATGATGATCCCTCTTCTTTAATTTCCCCCGATTTTGATTTTCATCAAAACCCCTCTTTTAATCTTCATAATCATAATCATTACCCTCCCACTCCCACTCCCACTCCCCCGGCTGCTTTCGCCACCGCCGCCCACCATCTCCCCCCGCTCCTCCCCGACCAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTCTTCCCCCGCCCCTCTTCTTACCTCCAAATTCTTGAAGCCAGCTCAGCAGCTACTCCACGACCTATTCCACTACGCCGACAAGTTCCCGCCTGATTCCCCCCTTGTTGACCCTCTTCTTCACAGCTTGGGCGCTGATATTCCCACCGCCGCTCTTCATCATCACCCCACCGACGATGGAATTGAAAGCCGGAGGAGAAAATCTAGGCTTATTACCATGCTCGACGAGGTTTATAGAAGATATAAGCTATACTATCAGCAGATGCAGGCAGTGGTGACAACATTCGAGTACGTTGGTGGGCTTGGCAATGCAGCTCCCTACGTGAACTTAGCCGTGAAAGCTATGTTTAAGCACTTCAGATTCTTAAAGAATGCCATTGCCGACCAGCTCCAATTGAACAAGCAGCATCAGCAGCCGCCGCCGCCTTATAACCCGTATTGTCAAAGATCTATTCACAACAACAGTGGGGGATTCGTGGATCACCAACCCGTTTGGCGCCCGCAGAGAGGCCTCCCCGAGAGTGCTGTCACCGTCCTACGAGCTTGGCTGTTTGAACATTTCCTCCATCCTTATCCTACGGATACCGACAAGCTCATGCTGGCTAACCAGACTGGTCTCTCGCGAAGCCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGGCTATGGAAGCCAATGGTGGAAGAAATCCACATGCTAGAAACAAGGGAAGCTCAGAAATCTCAGCACAGGGACGCCAATAATGGAACTCCCTTAAACAACAACAACAACGACGACCATCTTTCATCCACAAACCAATCATTGAATAACGCATCTTCTTCAAACCATGACCAACACCCACTCCACTTATCCAACTCCAATTTCTTTCCGACCCACCACCCTCACCCGCCTGCCGGAGCCACCACGATGGGCGCCGGCAACGTTTCCTTAACTCTGGGGCTCCACCAGAATCACGGCGGGATCACTCTCACAGAGCCGTTTCCGATCAATGCAGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGGTTTGTAAATGAGTGGTTTTGA 1407 51.03 MAEGFELYHVPQQSRRDKLRVGVGSGATNNPNFLPLYHHHGGGGGGGDDDDPSSLISPDFDFHQNPSFNLHNHNHYPPTPTPTPPAAFATAAHHLPPLLPDQQPPLSLDLNLQHRYASSPAPLLTSKFLKPAQQLLHDLFHYADKFPPDSPLVDPLLHSLGADIPTAALHHHPTDDGIESRRRKSRLITMLDEVYRRYKLYYQQMQAVVTTFEYVGGLGNAAPYVNLAVKAMFKHFRFLKNAIADQLQLNKQHQQPPPPYNPYCQRSIHNNSGGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETREAQKSQHRDANNGTPLNNNNNDDHLSSTNQSLNNASSSNHDQHPLHLSNSNFFPTHHPHPPAGATTMGAGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4872357 4876168 + CmoCh03G004110.1 Cmo03g00411 377874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00411 468 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 445 - -
Cmo03g00411 468 MobiDBLite consensus disorder prediction 1 57 - -
Cmo03g00411 468 SMART HOX_1 282 346 IPR001356 GO:0003677
Cmo03g00411 468 CDD homeodomain 282 343 IPR001356 GO:0003677
Cmo03g00411 468 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 95 445 - -
Cmo03g00411 468 ProSiteProfiles 'Homeobox' domain profile. 279 342 IPR001356 GO:0003677
Cmo03g00411 468 Pfam Associated with HOX 123 244 IPR006563 -
Cmo03g00411 468 MobiDBLite consensus disorder prediction 361 408 - -
Cmo03g00411 468 MobiDBLite consensus disorder prediction 353 421 - -
Cmo03g00411 468 SMART prehox3 117 245 IPR006563 -
Cmo03g00411 468 Pfam Homeobox KN domain 299 338 IPR008422 GO:0003677|GO:0006355
Cmo03g00411 468 Gene3D - 285 347 - -
Cmo03g00411 468 SUPERFAMILY Homeodomain-like 284 348 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00411 Cmo14g00104 CCT
Cmo03g00411 Cmo06g00271 CCT
Cmo03g00411 Cmo06g00271 ECH
Cmo03g00411 Cmo14g00104 ECH
Cmo03g00411 Cmo07g01064 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00411 Cmo-Chr3:4872357 Cmo13g00245 Cmo-Chr13:2012539 7.39E-75 dispersed
Cmo14g00104 Cmo-Chr14:480107 Cmo03g00411 Cmo-Chr3:4872357 3.92E-08 wgd
Cmo03g00411 Cmo-Chr3:4872357 Cmo06g00271 Cmo-Chr6:1371446 2.11E-95 wgd
Cmo03g00411 Cmo-Chr3:4872357 Cmo07g01064 Cmo-Chr7:5426177 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9379 PF07526 POX 1.80E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00411 - - cmos:111453568 816.224