Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00417 ATGGCTTTGTGCCGCATAAATCTTCCTCACCGGTGTTCTTCCGGCACACCGCGCCTTGGCCCCACTTGGTCCCTCCAAAACCCTAATCCTCCTCCTCCTCCTCAATTACTTTCTCCTTTTCCATCTCTTCTCAATTCCAATAAGTTATCCTATTCCAGAATCCGGGGCCGAAGCTTTATTGCCATGAACGCTCACATGGCCACGGAACCCAAGCCTGTTTCAGATGATAGAATGCTCGTTTATGTTCCTCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCAGAGCTAGGAAGACTGCTTATTTATGAAGCTTCAAGGGATTGGTTGCCTACTGTAACAGGGGAAATACAGTCACCCATGGGTGTTGCTTCAGTTGAGTTCGTCGACCCAAGAGAGCCTGTGGCGATAATTCCCATCCTCAGAGCTGGTCTAGCTCTTGCAGAATACGCATCATCTGTATTGCCTGCAACAAAAATGTACCATCTTGGGATAAGCAGGGACGAGGAGACTCTTCAACCAACTATATATCTTAACAAGTTACCTGAAAATTTTCCTGAAGGTTCTCGAATTTTTGTGGTTGATCCCATGCTTGCAACAGGTGGCACAGTTGTGGCAGCTCTTGATCTCATAAAGGAACGTGGAATTGGCAACAAGCAAATAAAAGTGATATCTGCTGTTGCTGCACCTCCCGCTCTAAAAAAGCTTAGCGAGAAGTTTCCAGGGCTACACGTATACACCGGAATTATTGACCCGACAGTTAACGAAAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGCGATCGCAGCTTTGGCACATGA 870 46.09 MALCRINLPHRCSSGTPRLGPTWSLQNPNPPPPPQLLSPFPSLLNSNKLSYSRIRGRSFIAMNAHMATEPKPVSDDRMLVYVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFVDPREPVAIIPILRAGLALAEYASSVLPATKMYHLGISRDEETLQPTIYLNKLPENFPEGSRIFVVDPMLATGGTVVAALDLIKERGIGNKQIKVISAVAAPPALKKLSEKFPGLHVYTGIIDPTVNEKGFIIPGLGDAGDRSFGT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4898332 4902592 - CmoCh03G004170.1 Cmo03g00417 377880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00417 289 CDD PRTases_typeI 145 265 IPR000836 -
Cmo03g00417 289 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 34 285 - -
Cmo03g00417 289 SUPERFAMILY PRTase-like 80 288 IPR029057 -
Cmo03g00417 289 TIGRFAM upp: uracil phosphoribosyltransferase 80 289 IPR005765 GO:0004845|GO:0006223
Cmo03g00417 289 Pfam Uracil phosphoribosyltransferase 82 289 - -
Cmo03g00417 289 PANTHER URIDINE KINASE 34 285 - -
Cmo03g00417 289 Gene3D - 72 289 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00417 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - csv:101209447 491.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00417 Cmo-Chr3:4898332 Cmo11g01624 Cmo-Chr11:11584968 3.00E-17 dispersed
Cmo03g00417 Cmo-Chr3:4898332 Cmo09g01036 Cmo-Chr9:5556538 3.71E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo20g00810 CST 79 559 PRT Gene Family AT2G16570 84.5 1.1e-239 826.6
Cmo02g00360 CST 70 556 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cmo02g00360 CST 72 556 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cmo20g00810 CST 79 559 PRT Gene Family AT4G34740 85.3 7.4e-241 830.5
Cmo20g00810 CST 57 532 PRT Gene Family AT4G38880 72.9 1.1e-198 690.3
Cmo02g00360 CST 69 529 PRT Gene Family AT4G38880 73.0 2.2e-194 676.0
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo15g01204 . 5 97 PRT Gene Family AT4G22570 86.0 2.1e-43 172.2
Cmo16g01113 . 6 97 PRT Gene Family AT4G22570 87.0 6.0e-43 170.6
Cmo06g00788 . 5 104 PRT Gene Family AT4G22570 78.0 6.7e-42 167.2
Cmo12g00534 CST 80 170 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cmo05g00378 CST 63 152 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo12g00294 CST 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo15g01204 . 1 96 PRT Gene Family AT4G12440 83.3 2.6e-40 161.8
Cmo06g00788 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cmo16g01113 . 1 96 PRT Gene Family AT4G12440 81.3 2.8e-39 158.3
Cmo12g00534 CST 74 169 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cmo05g00378 CST 56 151 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo09g01036 . 151 603 PRT Gene Family AT1G55810 85.5 2.3e-224 775.4
Cmo01g01098 . 81 537 PRT Gene Family AT1G55810 83.4 2.0e-220 762.3
Cmo11g01624 . 19 482 PRT Gene Family AT1G55810 75.1 4.2e-202 701.4
Cmo01g00411 . 19 482 PRT Gene Family AT1G55810 74.0 6.7e-200 694.1
Cmo09g01036 . 200 602 PRT Gene Family AT3G27440 77.2 1.3e-184 643.3
Cmo01g01098 . 131 550 PRT Gene Family AT3G27440 74.6 3.1e-183 638.6
Cmo11g01624 . 80 482 PRT Gene Family AT3G27440 75.4 1.1e-180 630.2
Cmo01g00411 . 80 482 PRT Gene Family AT3G27440 74.4 6.7e-178 620.9
Cmo11g01624 . 1 482 PRT Gene Family AT3G27190 86.5 1.1e-248 856.3
Cmo01g00411 . 1 482 PRT Gene Family AT3G27190 85.5 2.8e-244 841.6
Cmo09g01036 . 138 602 PRT Gene Family AT3G27190 72.9 3.7e-204 708.4
Cmo01g01098 . 68 536 PRT Gene Family AT3G27190 72.7 4.8e-204 708.0
Cmo03g00417 . 4 289 PRT Gene Family AT3G53900 66.0 7.4e-107 384.4
Cmo09g01036 . 136 603 PRT Gene Family AT4G26510 83.4 2.2e-230 795.4
Cmo01g01098 . 66 537 PRT Gene Family AT4G26510 82.3 6.4e-230 793.9
Cmo11g01624 . 7 482 PRT Gene Family AT4G26510 76.1 1.2e-212 736.5
Cmo01g00411 . 11 482 PRT Gene Family AT4G26510 75.0 2.5e-210 728.8
Cmo11g01624 . 1 482 PRT Gene Family AT5G40870 86.5 8.4e-249 856.7
Cmo01g00411 . 1 482 PRT Gene Family AT5G40870 85.9 1.1e-243 839.7
Cmo09g01036 . 179 605 PRT Gene Family AT5G40870 78.9 8.2e-204 707.2
Cmo01g01098 . 68 539 PRT Gene Family AT5G40870 71.5 3.1e-203 705.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00417 Cmo_Chr03 FPKM 7.908291 8.797482 17.206018 16.677189 9.194599 7.827201 8.640265 36.708652 33.395367 34.91151