Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00435 ATGGCTTCTCTTTCCCTCCTCTGCTGCATTTCCATTGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCTAGAATTCCCGGCGTCTACTCCGCCGGTGCCTGGCAGGACGCCCACGCCACATTCTACGGCGGCAGTGATGCTTCCGGAACCATGGGTGGTTCTTGTGGGTATGGGAATCTCTACAGCCAGGGGTATGGTGTTAACACTGCGGCTTTGAGTACTGCACTCTACAACAATGGCCTTAGCTGTGGTGCTTGCTTTGAGATCAAGTGCGCTAATGACCCCCAATGGTGCCATCCCGGTAGCCCTTCTATATTCATTACGGCTACCAATTTTTGTCCCCCCAATTACGCTCTTCCTAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCACCCATTTCGATCTCGCTATGCCTATGTTCCTGAAAATCGCCGAGTACCGCGCCGGAATCGTTCCCGTCTCTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACGAACGTCGCGGGTGCAGGGAATATCGTGAGGGTTAGCGTGAAAGGATCAAACACGGGTTGGATGAGCATGAGTCATAACTGGGGGCAAAATTGGCAATCCAACGTCGTTTTAGTGGGCCAGGCTCTGTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATTGAACGTGGTGCCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTTTGA 786 52.93 MASLSLLCCISIASFSSLFLLSHARIPGVYSAGAWQDAHATFYGGSDASGTMGGSCGYGNLYSQGYGVNTAALSTALYNNGLSCGACFEIKCANDPQWCHPGSPSIFITATNFCPPNYALPSDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGNIVRVSVKGSNTGWMSMSHNWGQNWQSNVVLVGQALSFRVTGSDRRTSTSLNVVPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4977128 4978871 + CmoCh03G004350.1 Cmo03g00435 377898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00435 261 Gene3D - 22 163 IPR036908 -
Cmo03g00435 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Cmo03g00435 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Cmo03g00435 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Cmo03g00435 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Cmo03g00435 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Cmo03g00435 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Cmo03g00435 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Cmo03g00435 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Cmo03g00435 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Cmo03g00435 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Cmo03g00435 261 PANTHER EXPANSIN 7 260 - -
Cmo03g00435 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Cmo03g00435 261 Gene3D - 167 259 IPR036749 -
Cmo03g00435 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Cmo03g00435 261 PANTHER EXPANSIN-A15 7 260 IPR002963 GO:0009664
Cmo03g00435 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Cmo03g00435 261 SMART dpbb_1 70 157 IPR007112 -
Cmo03g00435 261 Pfam Lytic transglycolase 70 157 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00435 Cmo07g01042 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00634 Cmo-Chr1:3246744 Cmo03g00435 Cmo-Chr3:4977128 3.76E-166 dispersed
Cmo03g00435 Cmo-Chr3:4977128 Cmo13g00120 Cmo-Chr13:694183 2.05E-151 dispersed
Cmo14g01136 Cmo-Chr14:8019201 Cmo03g00435 Cmo-Chr3:4977128 7.53E-99 dispersed
Cmo02g00797 Cmo-Chr2:4921039 Cmo03g00435 Cmo-Chr3:4977128 1.52E-169 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo03g00435 Cmo-Chr3:4977128 2.41E-169 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo04g00211 Cmo-Chr4:1056541 4.76E-94 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo04g01251 Cmo-Chr4:6347642 7.08E-142 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo04g02778 Cmo-Chr4:20041108 2.42E-132 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo07g01042 Cmo-Chr7:5279087 1.24E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00435 - - csv:101212872 495.352