Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00438 ATGGCTGAGAACGAGGACATCCAGCCTCTTGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCTCGCCATACAGGTGTTATGGTTGGAATGGGGCAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAATTCTTCTAACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTACGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGCATTGTGCTAGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCGCATGCTATCCTACGTATTGATCTTGCTGGCCGTGACCTGACTGACGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACTTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTTTGAGCAAGAATTAGAAGCCTCTAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAACTGCCAGATGGTCAGGTGATTACCATTGGCGCTGAGCGTTTCCGATGCCCGGAAGTCCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGAATTGCTGATAGAATGAGCAAGGAGATCACAGCCTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCGTCCTTGAGCACTTTCCAGCAGATTGTTCATCTCGCCAAGAATCTGAATCGCCGTAGCCGCCATCAAGAGTTTGTGGGAGGTTCCTACTCCATTCTCGTTTACCGCACTCTTTCTGATCCGAACATGGACGAGATATTTCATGTACCTCAAGCTCAGAAATGCTGCAGTGGGAACTTCCGAAGTTGGGACCCGAAGATTTCAAATCCTCCTGGACTTATCTCTATTTACATCAACCAATGCCAAATTCTTCCTTCTAATGAAACGATGATCACTGAAACGTCGTCGTGGTACTTCCGCCTCTCCCCTTGTGGGATGTCAAGCAGCTCATGGAAGGCCATTCCTGCATGTTTTCCAAATCACATCAGTAACTGCTCGAAACAATACTTCTTCAATGAGATTTTGAGCAGGATCTCCTTCAGGGAAAGAAGCAATGAAGGACTCTACTTGAGCAACAGCTTCTTCATTTGTAAAGTATTGATAGAGTCCATCAGACGACAATATCAAGAATCTGTCGGTTGGGCTGAGTTTATAATGGCACAGAGTTGGATCACAGGTGATGTAAGGTCTCTGTATGGTTCGAGTTGCTGCGCTACAATTGCACGGCTGTCTCCTACATTCATCAGGAGCATCAGGGCCGTTGAATCCATCATAAACTCCGACAAAAACCCAACCATTATCCTCCGATATCACCACGTGAACTCTATCCTCACCGGCCTTCCCCTGTGCCCACTGTACGCCCTGACCGCCGACAAAGTAATCGCCATCGTCTTCCTGCGCCAAACTGGCCTGGCTGCTCAAATGAACACTGCTTTGAGTCTGAGCTGCATTCTCATTATCCTTCTGGTTTCGAGAAATGGTTTTGGATATGGCTCTCTTGAGAATCCGAATGAGACTTCTTTTCGATTTCGGTTGTCTATCTCCAACGCCGCCGTCCGCCGCCCTTCTCAATCGAGCCGGAGTAAACCACTCGATCTATCGGGCCCGATTCGATGCTCCGGGCGGCCAAGGGTCCGGATAAGAACCCTCTCTCCATTGGACCCGAAGAAGGGAATCCACCGAAATTTCCCGACATCGAGTGGCGTGGCACCGGCTGTAGCGGCACAGAGGCAAAGGAATTCGAGCAATCGAAAGCAGCGGCCCGATCAAACGTGGTGCTATAAGGATATAGATCGACCAGAGACGTGGACAGCGGCGTTGAGACGTTGGCGCTTACAGAGGCGCCGGAAATCGACCGTCATCCGGGAAAGCTTTGAAGGAGGAGAGGGTTTGTGGGTCGGGTGGGAGATAGTAAAAGGAGTGGCCGAAACCGCCGTCGTGGCGGTCGGAGATTATGTCGGCAGGACCATAACGACTGGAAATATCGCCGGCGCCGGCGAAGCAGTGGCCAATCTTCCCAATATGATTACCCATATGAAAAAAGAAAACAAAAAAAAAATAGAGAATTTATCTTCTCTGCTGTTTGATTTGATTGATCTTGCATAA 2529 48.44 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRIDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELEASKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQIVHLAKNLNRRSRHQEFVGGSYSILVYRTLSDPNMDEIFHVPQAQKCCSGNFRSWDPKISNPPGLISIYINQCQILPSNETMITETSSWYFRLSPCGMSSSSWKAIPACFPNHISNCSKQYFFNEILSRISFRERSNEGLYLSNSFFICKVLIESIRRQYQESVGWAEFIMAQSWITGDVRSLYGSSCCATIARLSPTFIRSIRAVESIINSDKNPTIILRYHHVNSILTGLPLCPLYALTADKVIAIVFLRQTGLAAQMNTALSLSCILIILLVSRNGFGYGSLENPNETSFRFRLSISNAAVRRPSQSSRSKPLDLSGPIRCSGRPRVRIRTLSPLDPKKGIHRNFPTSSGVAPAVAAQRQRNSSNRKQRPDQTWCYKDIDRPETWTAALRRWRLQRRRKSTVIRESFEGGEGLWVGWEIVKGVAETAVVAVGDYVGRTITTGNIAGAGEAVANLPNMITHMKKENKKKIENLSSLLFDLIDLA 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4997804 5004247 - CmoCh03G004380.1 Cmo03g00438 377901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00438 842 PANTHER ACTIN-4 1 359 - -
Cmo03g00438 842 SMART actin_3 7 375 IPR004000 -
Cmo03g00438 842 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmo03g00438 842 Pfam Actin 5 357 IPR004000 -
Cmo03g00438 842 MobiDBLite consensus disorder prediction 699 730 - -
Cmo03g00438 842 Gene3D - 140 340 - -
Cmo03g00438 842 PRINTS Actin signature 63 85 IPR004000 -
Cmo03g00438 842 PRINTS Actin signature 238 254 IPR004000 -
Cmo03g00438 842 PRINTS Actin signature 51 62 IPR004000 -
Cmo03g00438 842 PRINTS Actin signature 142 161 IPR004000 -
Cmo03g00438 842 PRINTS Actin signature 117 130 IPR004000 -
Cmo03g00438 842 PRINTS Actin signature 28 37 IPR004000 -
Cmo03g00438 842 Pfam DIE2/ALG10 family 387 451 IPR016900 GO:0006488|GO:0106073
Cmo03g00438 842 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo03g00438 842 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmo03g00438 842 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Cmo03g00438 842 MobiDBLite consensus disorder prediction 710 729 - -
Cmo03g00438 842 PANTHER ACTIN 1 359 IPR004000 -
Cmo03g00438 842 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo03g00438 842 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmo03g00438 842 Gene3D - 10 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00438 Cmo-Chr3:4997804 Cmo14g00419 Cmo-Chr14:1994092 0 dispersed
Cmo15g00397 Cmo-Chr15:1826838 Cmo03g00438 Cmo-Chr3:4997804 0 wgd
Cmo02g00807 Cmo-Chr2:4963969 Cmo03g00438 Cmo-Chr3:4997804 0 wgd
Cmo03g00438 Cmo-Chr3:4997804 Cmo07g01037 Cmo-Chr7:5240682 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00438 K10355 - csv:101214246 704.901