Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00439 ATGGGTAATCATATTGGGAAGATTGGCCACTGCTTCGCCGGCGCCGGCGATATTTCCAGTCGTTATGGTCCTGCCGACATAATCTCCGACCGCCACGACGGCGGTTTCGGCCACTCCTTTTACTATCTCCCACCCGACCCACAAACCCTCTCCTCCTTCAAAGCTTTCCCGGATGACTACATCTCTCCAGCGACCATTTACCGGTCGATTTCCGGCGCCTCTGTAAGCGCCAACGTCTCAACGCCGCTGTCCACGTCTCTGGTCGATCTATATCCTTATAGCACCACGTTTGATCGGGCCGCTGCTTTCGATTGCTCGAATTCCTTTGCCTCTGTGCCGCTACAGCCGGTGCCACGCCACTCGATGTCGGGAAATTTCGGTGGATTCCCTTCTTCGGGTCCAATGGAGAGAGGGTTCTTATCCGGACCCTTGGCCGCCCGGAGCATCGAATCGGGCCCGATAGATCGAGTGGTTTACTCCGGCTCGATTGAGAAGGGCGGCGGACCTGAGAAATTGCAGAGAAGCGTCTCTAACGGCGGCGTTGGAGATAGACAACCGAAATCGAAAAGAAGTCTCATTCGGATTCTCAAGAGAGCCATATCCAAAACCATTTCTCGAAACCAGAAGGCTGCGAGTTCATACAAACATAATGAGAATGCAGCTCAGACTCAAAGCAGTGTTCATTTGAGCAGCCAGGCCAGTTTGGCGCAGGAAGACGATGGCGATTACTTTGTCGGCGGTCAGGGCGTACAGTGGGCACAGGGGAAGGCCGGTGAGGATAGAGTTCACGTGGTGATATCGGAGGATAATGGTTGGGTTTTTGTCGGAGTTTATGATGGATTCAACGGCCCTGATGCTCCTGATTACTTACTCGCTAATCTCTACACTGCCGTTCTCAAAGAGCTCAAGGGTTTGATATGGAATGATAAGTTCGATTCAACTGCAACCACGTCTTCCATGAACTCATCCAACTCTGCTTCAATTGAGGAAGACGATCATGGAACAACCCACATAGAAACTCAGGCTAATGTTCATCAACCTACAGAGAACTTTTCGGCAGAAAATAGGACGAGACAGCTGATGAAGAAGGGCGATCAGGATCCAAGGAATTGGAAATGGGAAAGGGAAAGGGAAAGCATAGGATTAGATCACCACAACATATGGGATGAATCAACAACAATCAATCATTCTGAGTTGTTGAATGCTCTGTCTGAAGCATTGAAAAAAACAGAGGAATCATATCTGCAGAATGCAGACAAGATGGCCACAAGAAATCCTGAGCTAGCTCTAATGGGTTCTTGTGTTTTGGTTATGTTAATGAGAGGAGAAGATGTGTACCTGATGAATGTAGGAGACAGCCGTGCAATTGTAGCGCAGCAACTCGAACCATACAGAGACCTGGAGAGAATCAATGAAGGAACACCACGAGTATTAGAATCCCCTGAAAGATTAACAGCCTTGGCTTCCCATCAGCTTACAATGGACCACAGCACGTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGACGACCCTTCCGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAAATCACACGGGCGTTTGGAGCTGGCTTTCTGAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACTCTGTGCCATTATAAACTCAGCCCAACCGACAGATTCTTGATATTGTCGTCTGATGGACTCTATCAATACTTTACAAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTCCCTGAAGGAGATCCTGCTCAAAATCTCATTGAAGAAGTATTGTTTCGAGCAGCTAAAAAATATGGAATGGCCTTCCATGAGCTGCTTGACATCCCACAAGGGGAGAGGCGGAAGTACCACGACGACGTTTCAGTGATCATCGTTTCATTAGAAGGAAGAATTTGGCATTGGTTGATGTAA 2001 47.73 MGNHIGKIGHCFAGAGDISSRYGPADIISDRHDGGFGHSFYYLPPDPQTLSSFKAFPDDYISPATIYRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRHSMSGNFGGFPSSGPMERGFLSGPLAARSIESGPIDRVVYSGSIEKGGGPEKLQRSVSNGGVGDRQPKSKRSLIRILKRAISKTISRNQKAASSYKHNENAAQTQSSVHLSSQASLAQEDDGDYFVGGQGVQWAQGKAGEDRVHVVISEDNGWVFVGVYDGFNGPDAPDYLLANLYTAVLKELKGLIWNDKFDSTATTSSMNSSNSASIEEDDHGTTHIETQANVHQPTENFSAENRTRQLMKKGDQDPRNWKWERERESIGLDHHNIWDESTTINHSELLNALSEALKKTEESYLQNADKMATRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQLEPYRDLERINEGTPRVLESPERLTALASHQLTMDHSTYTEEEVQRIKNAHPDDPSAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYFTNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMAFHELLDIPQGERRKYHDDVSVIIVSLEGRIWHWLM 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4997810 5000366 + CmoCh03G004390.1 Cmo03g00439 377902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00439 666 PANTHER PROTEIN PHOSPHATASE 2C 20 662 IPR015655 GO:0004722|GO:0006470
Cmo03g00439 666 ProSiteProfiles PPM-type phosphatase domain profile. 244 657 IPR001932 -
Cmo03g00439 666 CDD PP2Cc 256 657 IPR001932 -
Cmo03g00439 666 Pfam Protein phosphatase 2C 392 629 IPR001932 -
Cmo03g00439 666 SMART PP2C_4 243 655 IPR001932 -
Cmo03g00439 666 MobiDBLite consensus disorder prediction 161 188 - -
Cmo03g00439 666 Gene3D - 207 661 IPR036457 -
Cmo03g00439 666 MobiDBLite consensus disorder prediction 207 232 - -
Cmo03g00439 666 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 20 662 - -
Cmo03g00439 666 SUPERFAMILY PP2C-like 255 658 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00439 Cmo07g01039 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00805 Cmo-Chr2:4953061 Cmo03g00439 Cmo-Chr3:4997810 0 dispersed
Cmo03g00439 Cmo-Chr3:4997810 Cmo07g01039 Cmo-Chr7:5258432 0 dispersed
Cmo20g00446 Cmo-Chr20:2072912 Cmo03g00439 Cmo-Chr3:4997810 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00439 - - bhj:120069881 1142.87