Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00443 ATGGTGTTTCCCTCTCACCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACATCAAACCCCAACCCATCAATCTGGGACCAGTTTTCAGCTCGTCTCGCCGCCACGGGCGCCGCCACAAGTCCGCCCCGGCTCGATGGTGGATCGTGCCCGAATGGCGAACCTGCCGGTGCCGGAGACAGCCCTGAAATGTCCAAGATGTGAATCAACTAACACAAAGTTTTGTTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTTTGCAAGACCTGCCGTCGTTACTGGACCAGAGGTGGCGCCCTTAGAAGTGTCCCGGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACCGACGACTACCACCGAGATATCAGGAGGAGAAACAATGAGATTAAATTACATACAAAATGAAAGAGGTATGGATTCAACTCATCCCCCCATTGGGATAACAAGCTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTACACCGAACGCAGCCAGCTCGGTTGCTCGGAAACGGTGGTGGTGGTGGCGGCGACGACGCATCGTCGAGCTATAGCATTGTCGGGAAGATGGAAGCGACGAAAATGGAGGACGATGGAGATCACCATGTGAATGTGGGAAAGCCATTTTGGGATCGCCATTATTGGAATGCTTTTAATCCTTCATCTTCTTCTTCCCATTTATGA 753 50.46 MVFPSHPSNYLDPTTHQWQHQTPTHQSGTSFQLVSPPRAPPQVRPGSMVDRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTTTEISGGETMRLNYIQNERGMDSTHPPIGITSFLGFDQIQWRPQLQLHRTQPARLLGNGGGGGGDDASSSYSIVGKMEATKMEDDGDHHVNVGKPFWDRHYWNAFNPSSSSSHL 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5025083 5026331 - CmoCh03G004430.1 Cmo03g00443 377906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00443 250 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Cmo03g00443 250 MobiDBLite consensus disorder prediction 1 46 - -
Cmo03g00443 250 Pfam Dof domain, zinc finger 63 118 IPR003851 GO:0003677|GO:0006355
Cmo03g00443 250 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 173 IPR045174 GO:0003700|GO:0006355
Cmo03g00443 250 MobiDBLite consensus disorder prediction 8 36 - -
Cmo03g00443 250 MobiDBLite consensus disorder prediction 122 140 - -
Cmo03g00443 250 MobiDBLite consensus disorder prediction 109 140 - -
Cmo03g00443 250 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 16 173 - -
Cmo03g00443 250 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00443 - - - cmos:111453164 518.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00443 Cmo06g00304 CCT
Cmo03g00443 Cmo14g00147 CCT
Cmo03g00443 Cmo14g00147 ECH
Cmo03g00443 Cmo06g00304 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00443 Cmo-Chr3:5025083 Cmo13g00132 Cmo-Chr13:757753 2.76E-45 dispersed
Cmo14g00147 Cmo-Chr14:642536 Cmo03g00443 Cmo-Chr3:5025083 8.57E-52 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo03g00443 Cmo-Chr3:5025083 4.75E-46 wgd
Cmo02g00815 Cmo-Chr2:4986104 Cmo03g00443 Cmo-Chr3:5025083 5.66E-43 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo03g00443 Cmo-Chr3:5025083 1.36E-43 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g00221 Cmo-Chr4:1111117 6.14E-41 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g01262 Cmo-Chr4:6404620 6.98E-42 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g02761 Cmo-Chr4:19969703 6.35E-42 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo06g00304 Cmo-Chr6:1499655 7.80E-45 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo07g01030 Cmo-Chr7:5100192 9.88E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 6.3e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 3.2e-41 165.6
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.6e-40 161.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.6e-40 161.8
Cmo15g01373 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.7e-39 160.2
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 6.1e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.4e-41 166.8
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 5.5e-38 154.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.7e-37 152.5
Cmo04g02761 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 5.1e-40 162.5
Cmo14g00147 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.2e-38 157.1
Cmo06g00304 CCT,CST,ECH 1 127 C2C2-Dof Transcription Factor Family AT2G37590 64.8 4.8e-38 156.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 58.0 4.1e-37 152.9
Cmo13g00132 CCT,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cmo15g01373 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 73.1 1.5e-39 161.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 6.2e-40 162.5
Cmo13g00132 CCT,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cmo15g00409 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.3e-37 154.8
Cmo03g00443 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.4e-36 150.6
Cmo03g00443 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.9e-37 152.5
Cmo13g00132 CCT,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 51.6 2.2e-36 150.6
Cmo11g00231 CCT,CST 26 311 C2C2-Dof Transcription Factor Family AT5G60850 53.2 3.9e-50 196.1
Cmo10g00299 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 1.1e-47 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012147 0 0 1 0 0 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9382 PF02701 zf-Dof 3.20E-31 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00443 Cmo_Chr03 FPKM 1.623932 0.939626 0.197003 0.745643 0.0 0.0 0.0 4.616482 4.507761 5.289484