Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00443 ATGGTGTTTCCCTCTCACCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACATCAAACCCCAACCCATCAATCTGGGACCAGTTTTCAGCTCGTCTCGCCGCCACGGGCGCCGCCACAAGTCCGCCCCGGCTCGATGGTGGATCGTGCCCGAATGGCGAACCTGCCGGTGCCGGAGACAGCCCTGAAATGTCCAAGATGTGAATCAACTAACACAAAGTTTTGTTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTTTGCAAGACCTGCCGTCGTTACTGGACCAGAGGTGGCGCCCTTAGAAGTGTCCCGGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACCGACGACTACCACCGAGATATCAGGAGGAGAAACAATGAGATTAAATTACATACAAAATGAAAGAGGTATGGATTCAACTCATCCCCCCATTGGGATAACAAGCTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTACACCGAACGCAGCCAGCTCGGTTGCTCGGAAACGGTGGTGGTGGTGGCGGCGACGACGCATCGTCGAGCTATAGCATTGTCGGGAAGATGGAAGCGACGAAAATGGAGGACGATGGAGATCACCATGTGAATGTGGGAAAGCCATTTTGGGATCGCCATTATTGGAATGCTTTTAATCCTTCATCTTCTTCTTCCCATTTATGA 753 50.46 MVFPSHPSNYLDPTTHQWQHQTPTHQSGTSFQLVSPPRAPPQVRPGSMVDRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTTTEISGGETMRLNYIQNERGMDSTHPPIGITSFLGFDQIQWRPQLQLHRTQPARLLGNGGGGGGDDASSSYSIVGKMEATKMEDDGDHHVNVGKPFWDRHYWNAFNPSSSSSHL 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5025083 5026331 - CmoCh03G004430.1 Cmo03g00443 377906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00443 250 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Cmo03g00443 250 MobiDBLite consensus disorder prediction 1 46 - -
Cmo03g00443 250 Pfam Dof domain, zinc finger 63 118 IPR003851 GO:0003677|GO:0006355
Cmo03g00443 250 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 173 IPR045174 GO:0003700|GO:0006355
Cmo03g00443 250 MobiDBLite consensus disorder prediction 8 36 - -
Cmo03g00443 250 MobiDBLite consensus disorder prediction 122 140 - -
Cmo03g00443 250 MobiDBLite consensus disorder prediction 109 140 - -
Cmo03g00443 250 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 16 173 - -
Cmo03g00443 250 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00443 Cmo06g00304 CCT
Cmo03g00443 Cmo14g00147 CCT
Cmo03g00443 Cmo14g00147 ECH
Cmo03g00443 Cmo06g00304 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00443 Cmo-Chr3:5025083 Cmo13g00132 Cmo-Chr13:757753 2.76E-45 dispersed
Cmo14g00147 Cmo-Chr14:642536 Cmo03g00443 Cmo-Chr3:5025083 8.57E-52 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo03g00443 Cmo-Chr3:5025083 4.75E-46 wgd
Cmo02g00815 Cmo-Chr2:4986104 Cmo03g00443 Cmo-Chr3:5025083 5.66E-43 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo03g00443 Cmo-Chr3:5025083 1.36E-43 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g00221 Cmo-Chr4:1111117 6.14E-41 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g01262 Cmo-Chr4:6404620 6.98E-42 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g02761 Cmo-Chr4:19969703 6.35E-42 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo06g00304 Cmo-Chr6:1499655 7.80E-45 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo07g01030 Cmo-Chr7:5100192 9.88E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9382 PF02701 zf-Dof 3.20E-31 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00443 - - cmos:111453164 518.85