Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00449 ATGAGCGTGAACATAACCTCCATCAAAATCGCCTCCAATGGCGTCTGGCAAGGCGACAACCCCCTCCACTTCGCTTTCCCTCTCTTAATCCTTCAGTCCGTCCTCATTCTCCTCCTCTCCCGCCTCCTCGCCCTCCTCCTCAAACCTCTCCGGCAGCCCAAAGTCATCGCCGAAATCGTCGGTGGGATTCTTCTGGGTCCGTCGGCGCTCGGCCGAAACAAAGCTTATTTGCACCGGATTTTCCCTCAATGGAGCACTCCGATTCTCGAATCCGTTGCCAGCATCGGTTTATTGTTCTTCCTGTTCCTCGTTGGACTCGAACTCGATTTGTCCTCCATTCGTCGCAGCGGTCGGAGGGCTTTCGGAATCGCCCTCGCCGGAATCTCTGTCCCTTTCCTCTCCGGTATCGGAGTAGCCTTCATCCTCCGTAAAACCGTAGACGGCGTTGACAAAGTCGGCTATGGTCAATTCATTGTATTCATGGGTGTCGCCTTGTCCATCACTGCCTTCCCTGTTCTTGCTCGCATTTTAGCTGAGCTTAAGCTCCTCACTACCCAAGTCGGCGAAACCGCCATGGCTGCTGCTGCGTTTAACGACATCGCCGCTTGGATTCTCCTCGCACTTGCGGTGGCTCTCGCCGGTAACGGCGAAGGTGGGGCCCAAAAGAGTCCGTTGGTGTCAGTGTGGGTCCTACTTTCCGGAGGTGCGTATGTCGTTTTCATGATGGTGGTTATTCGTCCCGGAATGAAATGGGTTGTGCGGCGGTGTTCGTACGAGCACGATGCTCTGGGCGACGCGTATATCTGTTTGACGTTAGTGGGGGTGTTGGTGTCGGGATTCGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGTTTTGTGTTTGGATTGGCGATTCCGAAAGGGGGAAGGTTTGCGGAGAGATTGATTGAGAGGATTGAAGATTTTGTGTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGGTTGAAGACGGATGTGGCTAAGATTAAAGGGGGCAGAGCGTGGGGGCTGCTGGCGTTAGTTATCTCCACTGCGTGCGCCGGTAAGATTCTGGCGACATTTGTGGCGGCGATGGCGTTTCTGATCCCGGCGAGAGAGGCGTTGGCGTTGGGGCTTCTTATGAACACTAAAGGCTTGGTTGAATTGATTGTTCTCAATATTGGCAAAGAGAAAAAGGTTTTGAACGACGAAATCTTCGCCATTTTAGTGTTAATGGCACTGTTCACAACATTCATCACTACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCCACGAACCCACCGGAAACTCCACGACCTGTCGGGCGACGACGAGCTTCGGATCCTAGCCTGTCTCCACAGCTCTGGCAACGTGCCGTCCCTCATGGGTCTGACCGAAGCGACTCGCAGCACAAAAAACTCATCCCTCAAACTCTTCGTGATGCATCTGGTCGAGCTCACCGAGCGGTCTTCGTCCATCATGATGGTCCAACGCGCCCGCAAAAACGGCTTTCCTTTCTTTGCCAGGTTCCGGAAGGCCGGTGAGTGGCGCGACCAGATGGCTGCTGCCTTTCAGGCCTACAGCCAACTGGGTCGGGTTAAGGTCCGCCCCACTACGGCCGTCTCTTCCTTGGCCACTATGCATGAGGATATCTGCCACGTGGCGAACGAGAAGAGGGTCACGATGATCATCTTGCCATTCCATCGGAATTGGAGGGTGTTTGACGGCGACGGCAAGGAAGAGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTCTGAAGAATGCGCCTTGCTCCGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCAATACGGTTCATACGCCTGGGCCTGGGCTCATGGTTGGTGTGGCCCAAAGGATTTGTATCGTGTTTTTTGGTGGGCCCGATGACCGGGAGGCGCTGGAGTTGGGTGGCCTGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTAAGGTTCCGGCCGTCGCCATCGAATGGGTTTGAGGGTAGCAACTTCATTTTACGCCCCATGCACTCCAAATCTGGCGACAACCGTTATAGCTTCTCCACAGATCCAATCAACCGGGAAAAAGAAAAGGAGTTAGATAATGTAGCACTGACGGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACACAGAGAAGGAGGCCAGCAACACGAACATGATAGTCGAAGGGGTGGTGGGCATTGGAAAGGAAGGTGGTTATGACCTAGTCGTGGTCGGGAAGGGTCGGGTTCCCTCCAGCATGGTGGTGAAACTAGCGGACCGACCAGCAGAGCACGCAGAGTTGGGGCCAGTAGGGGACATACTAGCCAGCTCGAGTAGGGGAATAGTATCATCAATACTAGTAATTCAACAACATGGAGGAGGTGGTCATGCAGAAGAAGCTCTGGTTTTGAAGATAGCAGAATCGAGTAAGAACGAACAGCCCTTGGCAATCGATGGGGCTTCAACTAATGTATAA 2532 54.03 MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIVGGILLGPSALGRNKAYLHRIFPQWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRRAFGIALAGISVPFLSGIGVAFILRKTVDGVDKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDIAAWILLALAVALAGNGEGGAQKSPLVSVWVLLSGGAYVVFMMVVIRPGMKWVVRRCSYEHDALGDAYICLTLVGVLVSGFVTDLIGIHSIFGGFVFGLAIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGRAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEIFAILVLMALFTTFITTPTVMAVYKPARGGSTPRTHRKLHDLSGDDELRILACLHSSGNVPSLMGLTEATRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKAGEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVANEKRVTMIILPFHRNWRVFDGDGKEEEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGANTVHTPGPGLMVGVAQRICIVFFGGPDDREALELGGLMAEHPAVKVTVVRFRPSPSNGFEGSNFILRPMHSKSGDNRYSFSTDPINREKEKELDNVALTEFRSKWDATVEYTEKEASNTNMIVEGVVGIGKEGGYDLVVVGKGRVPSSMVVKLADRPAEHAELGPVGDILASSSRGIVSSILVIQQHGGGGHAEEALVLKIAESSKNEQPLAIDGASTNV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5050317 5054161 + CmoCh03G004490.1 Cmo03g00449 377912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00449 843 Gene3D - 456 790 - -
Cmo03g00449 843 PANTHER BNAC06G14930D PROTEIN 3 824 - -
Cmo03g00449 843 PANTHER CATION/H + ANTIPORTER 3 824 - -
Cmo03g00449 843 Pfam Sodium/hydrogen exchanger family 35 427 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo03g00449 843 Gene3D - 28 436 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00449 - - - csv:101207589 1365.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00449 Cmo-Chr3:5050317 Cmo16g00620 Cmo-Chr16:3029204 0 dispersed
Cmo03g00449 Cmo-Chr3:5050317 Cmo07g01023 Cmo-Chr7:5063025 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo20g01059 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Cmo02g00632 . 1 691 Antiporter Super Family AT2G13620 71.0 4.7e-284 974.5
Cmo03g00449 . 75 843 Antiporter Super Family AT3G53720 66.7 8.0e-278 953.7
Cmo07g01023 . 76 755 Antiporter Super Family AT3G53720 57.6 3.8e-219 758.8
Cmo16g00620 . 83 779 Antiporter Super Family AT3G53720 50.7 2.5e-186 649.8
Cmo16g00617 . 83 774 Antiporter Super Family AT3G53720 50.3 1.5e-183 640.6
Cmo04g00757 . 1695 2378 Antiporter Super Family AT3G53720 50.1 1.7e-182 637.1
Cmo16g00620 . 1 797 Antiporter Super Family AT5G41610 68.4 1.2e-305 1046.2
Cmo04g00757 . 838 1626 Antiporter Super Family AT5G41610 66.8 3.0e-299 1025.0
Cmo16g00617 . 1 777 Antiporter Super Family AT5G41610 66.5 9.9e-295 1010.0
Cmo16g00619 . 3 706 Antiporter Super Family AT5G41610 66.9 5.3e-264 907.9
Cmo03g00449 . 8 818 Antiporter Super Family AT5G41610 51.3 6.3e-209 724.9
Cmo04g00757 . 1623 2378 Antiporter Super Family AT4G23700 67.6 3.3e-290 995.0
Cmo16g00617 . 11 796 Antiporter Super Family AT4G23700 64.4 3.4e-287 984.9
Cmo16g00620 . 1 779 Antiporter Super Family AT4G23700 63.8 6.5e-278 954.1
Cmo16g00619 . 3 723 Antiporter Super Family AT4G23700 63.6 1.6e-260 896.3
Cmo04g00757 . 1621 2378 Antiporter Super Family AT3G17630 64.2 3.3e-274 941.8
Cmo16g00617 . 4 796 Antiporter Super Family AT3G17630 62.7 2.8e-273 938.7
Cmo16g00620 . 5 779 Antiporter Super Family AT3G17630 64.0 2.9e-270 928.7
Cmo16g00619 . 3 704 Antiporter Super Family AT3G17630 63.9 4.9e-246 848.2
Cmo03g00449 . 2 808 Antiporter Super Family AT3G17630 51.6 1.7e-206 716.8
Cmo16g00617 . 3 777 Antiporter Super Family AT1G64170 57.9 2.0e-239 826.2
Cmo04g00757 . 1623 2378 Antiporter Super Family AT1G64170 58.0 1.1e-234 810.4
Cmo16g00620 . 10 789 Antiporter Super Family AT1G64170 56.3 1.7e-230 796.6
Cmo16g00619 . 3 706 Antiporter Super Family AT1G64170 58.0 1.0e-214 744.2
Cmo20g01059 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Cmo02g00632 . 1 691 Antiporter Super Family AT2G13620 71.0 4.7e-284 974.5
Cmo16g00617 . 3 777 Antiporter Super Family AT1G64170 57.9 2.0e-239 826.2
Cmo04g00757 . 1623 2378 Antiporter Super Family AT1G64170 58.0 1.1e-234 810.4
Cmo16g00620 . 10 789 Antiporter Super Family AT1G64170 56.3 1.7e-230 796.6
Cmo16g00619 . 3 706 Antiporter Super Family AT1G64170 58.0 1.0e-214 744.2
Cmo04g00757 . 1623 2378 Antiporter Super Family AT4G23700 67.6 3.3e-290 995.0
Cmo16g00617 . 11 796 Antiporter Super Family AT4G23700 64.4 3.4e-287 984.9
Cmo16g00620 . 1 779 Antiporter Super Family AT4G23700 63.8 6.5e-278 954.1
Cmo16g00619 . 3 723 Antiporter Super Family AT4G23700 63.6 1.6e-260 896.3
Cmo16g00620 . 1 797 Antiporter Super Family AT5G41610 68.4 1.2e-305 1046.2
Cmo04g00757 . 838 1626 Antiporter Super Family AT5G41610 66.8 3.0e-299 1025.0
Cmo16g00617 . 1 777 Antiporter Super Family AT5G41610 66.5 9.9e-295 1010.0
Cmo16g00619 . 3 706 Antiporter Super Family AT5G41610 66.9 5.3e-264 907.9
Cmo03g00449 . 8 818 Antiporter Super Family AT5G41610 51.3 6.3e-209 724.9
Cmo04g00757 . 1621 2378 Antiporter Super Family AT3G17630 64.2 3.3e-274 941.8
Cmo16g00617 . 4 796 Antiporter Super Family AT3G17630 62.7 2.8e-273 938.7
Cmo16g00620 . 5 779 Antiporter Super Family AT3G17630 64.0 2.9e-270 928.7
Cmo16g00619 . 3 704 Antiporter Super Family AT3G17630 63.9 4.9e-246 848.2
Cmo03g00449 . 2 808 Antiporter Super Family AT3G17630 51.6 1.7e-206 716.8
Cmo03g00449 . 75 843 Antiporter Super Family AT3G53720 66.7 8.0e-278 953.7
Cmo07g01023 . 76 755 Antiporter Super Family AT3G53720 57.6 3.8e-219 758.8
Cmo16g00620 . 83 779 Antiporter Super Family AT3G53720 50.7 2.5e-186 649.8
Cmo16g00617 . 83 774 Antiporter Super Family AT3G53720 50.3 1.5e-183 640.6
Cmo04g00757 . 1695 2378 Antiporter Super Family AT3G53720 50.1 1.7e-182 637.1
Cmo17g00938 CST 47 790 Antiporter Super Family AT3G52080 54.1 1.1e-232 803.9
Cmo08g00509 CST 47 790 Antiporter Super Family AT3G52080 54.0 7.1e-229 791.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00449 Cmo_Chr03 FPKM 3.05315 6.049167 1.354849 1.010428 52.779255 54.766365 54.612026 3.760995 4.179138 3.642702