Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00463 ATGGAATCCTTGCCTTATGCCCACGTTGATTCGAGCCTTCGAGCCCTCGCCGGTCAGGCCGAGGGCTTTGGCCGTTCTGCCATTGGTGGTCTTTATGGCTCTGTTTATTGTGTCACTAATTTAGCAGGTCATGATGGTCCGGGATCGCTTAGGTTCGGGTGTCGTATGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCAGGCACAATTCACTTGTCGACATTTCTTAGCGTGTCATCTTATAAAACTGTAGATGGTCGTGGACAAAGGATAAAATTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTAATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAGTTCAAATCAAACCCAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCAGAGGAAGCACAGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACGATGCTCATTGGAGCCGATCCATCGCACGTCGGTGATCGATGCATTCGTGTCACTATTCACCACTGTTTTTTCGATGGTACTCGGCAACGGCATCCTCGTGTTAGATTTGCTCAAGTGCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATATACTCTCAGTGCAACATATACGAAGCAGGAGAGAAAAAGGTGGCATTTAGATATCTAACTGAAAAGGCAGCAGACAAGGAAGAGCCCTCAAGTGGGTGCATACGGTCCGACGGAGACTTGTTTGTAAATGACACACAAAGCGGGCTGTCGGCGCCAACCGCCGGACCCAGCTCGTTTCATCCCTCACAACATTACACTGCCTGGACAGTGGAACCTCCAACGGATGCTCTGAAACAGATCCTCCAACTTTGTACTGGATGCCAAAACATCCCAAGCCCCACTGATCTGCCTCTTCTACCTTAG 999 46.85 MESLPYAHVDSSLRALAGQAEGFGRSAIGGLYGSVYCVTNLAGHDGPGSLRFGCRMKEPLWIIFEVSGTIHLSTFLSVSSYKTVDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGHDVDGVQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGEKKVAFRYLTEKAADKEEPSSGCIRSDGDLFVNDTQSGLSAPTAGPSSFHPSQHYTAWTVEPPTDALKQILQLCTGCQNIPSPTDLPLLP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5114304 5118154 - CmoCh03G004630.1 Cmo03g00463 377926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00463 332 PANTHER PECTATE LYASE 1 325 - -
Cmo03g00463 332 Gene3D - 6 312 IPR012334 -
Cmo03g00463 332 SMART amb_all 47 245 IPR002022 -
Cmo03g00463 332 PRINTS Pollen allergen Amb family signature 75 91 IPR018082 -
Cmo03g00463 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Cmo03g00463 332 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Cmo03g00463 332 SUPERFAMILY Pectin lyase-like 17 321 IPR011050 -
Cmo03g00463 332 Pfam Pectate lyase 76 238 IPR002022 -
Cmo03g00463 332 PANTHER PECTATE LYASE 18-RELATED 1 325 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00463 Cmo-Chr3:5114304 Cmo03g00574 Cmo-Chr3:5590040 2.67E-53 dispersed
Cmo03g00463 Cmo-Chr3:5114304 Cmo07g01008 Cmo-Chr7:4979338 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00463 K01728 - csv:101219724 613.994