Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00476 ATGAATGCTCATGCTAGCAGGCAGAATGGGTTAAGAGAAACAAGTCACCACGCACGGGATGGTAATGGAATCGTGAACAGTGGTGTATCTGGCAGGGAACAGAGCCCAGTTGAGGAAAACGAGTTGAAGGTCAATGGATTAACTAGAAATACAGAAGATGGACGAAAATCCACCGTTCAAGCCCAGGACATTCTGCAAATACATCAGCAGCAGCATCCTCAAGGGTCTATGGTCTGCTGGGAGAGATTTCTTCATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAATGATGATTCCACCCGGCACCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTGCATGCATGGAAGATGCTTGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGCTTATCTGGCATTGGTCTTCTATGCAAGATTATGAGCCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTCAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAGGCGTTGAAAAAACAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAATATTGATGATGGAAGTGACGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGAATAAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCTAATAATGTGCCAATTGTTTTAACAGCAGGGTGCCAGGGGCAGAAAAAGCAACTTGTTGAATTAGGCGTGCACGGCGATTTAGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAATTAACAGGAAACAGAACATTATGCTTGAGATCGGGTCCAGTGGATTCAATGAGCAGTTCAACAAAGCAGATCTTGACCTCAACTCTGATAGCCCATGCAGCAAACTTAAGTGCGAGGAAACAACTGTTACTGGTCTTGCTACTAATCTTACTGATTCTAAGATGGATGTCACTGTGTTTGAGGTGCCGAGCAACCATCCCAAGACTACAGATATTAAGAATAAAAGTGTTACAGATTCAGAAGATTTTCCATGCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAGCGACAGGGAAAGCTGTCCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCATTTTCTAGGTACAATGCTGGCTCGAATTCTAACAAGACTCCAACTGGGAATGCCGGAAGTAGCTCTCCACCTGTCAATGGCAGAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGTTCTCATTCAAGTGGTAACCCTCCCAATCAATGTTCAAATGGAGATAGCAATAATATCGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCCATAGTTATTAATAACAAGTCAGCAATGGCATCAACTGTCAACTGTTTACACCCATCGGCAGCTTTCCAACCTGTTAAGAATGACAGTCTATCCGTTCCTCAGAAAGCTGATAACGTCATTAATGTTACAACTACAGCAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAGATGCAGCAACCTTGTCACCCGTATGATCCCACTCATCAGTTTGTCCACAATGTGCAACGAGTGTCATCTGACCATAATGATTATTCCTTAAAGAAAACATCTGCAGCTATCGCGCATTGTGGGTCAACCAATGTGTTAAATGGCCATGTAGAAGGTAATGCGGCTAATTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCTGCAATGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCAGAAAAGCCGAAGTGGAGATGCCAGTGGAAGTGGAAGTGGGAGTGGAAATGGAAGCGGGAACAAAGTGGACCTAAGCAAAGTTTCACAAAGGGAAGCTGCCCTGACTAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTCCGATACCAAAGCAGAAAGCGATTAGCAGAACAGAGACCTCGTGTCCGGGGACAGTTTGTGCGACAAAACACGAGCGAAAACACAAGCAATGCAGGAGATGGCTAA 2343 43.7 MNAHASRQNGLRETSHHARDGNGIVNSGVSGREQSPVEENELKVNGLTRNTEDGRKSTVQAQDILQIHQQQHPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKGVEKTDNNTGSNDEEEDNESIGFNIDDGSDDGSGTQSSWTKQAIEVESPRPVSASAWNKKRERPDSTCAQVVHSNADAFANNVPIVLTAGCQGQKKQLVELGVHGDLDLQLELSTEHPTKLINRKQNIMLEIGSSGFNEQFNKADLDLNSDSPCSKLKCEETTVTGLATNLTDSKMDVTVFEVPSNHPKTTDIKNKSVTDSEDFPCLELGLKRLRGVQATGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSSSPPVNGREVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVINNKSAMASTVNCLHPSAAFQPVKNDSLSVPQKADNVINVTTTAMQAQSNFVHRESQMQQPCHPYDPTHQFVHNVQRVSSDHNDYSLKKTSAAIAHCGSTNVLNGHVEGNAANYSVNGSASGSNHGSNGQNGSCNAVNAGGLNMESDNGIGQKSRSGDASGSGSGSGNGSGNKVDLSKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5175369 5182857 - CmoCh03G004760.1 Cmo03g00476 377939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00476 780 Gene3D - 88 255 - -
Cmo03g00476 780 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Cmo03g00476 780 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Cmo03g00476 780 MobiDBLite consensus disorder prediction 467 533 - -
Cmo03g00476 780 MobiDBLite consensus disorder prediction 1 55 - -
Cmo03g00476 780 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 756 - -
Cmo03g00476 780 MobiDBLite consensus disorder prediction 736 751 - -
Cmo03g00476 780 Pfam CCT motif 726 768 IPR010402 GO:0005515
Cmo03g00476 780 MobiDBLite consensus disorder prediction 664 780 - -
Cmo03g00476 780 MobiDBLite consensus disorder prediction 451 533 - -
Cmo03g00476 780 MobiDBLite consensus disorder prediction 664 721 - -
Cmo03g00476 780 MobiDBLite consensus disorder prediction 261 276 - -
Cmo03g00476 780 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 756 IPR045279 GO:0009736
Cmo03g00476 780 MobiDBLite consensus disorder prediction 213 230 - -
Cmo03g00476 780 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cmo03g00476 780 ProSiteProfiles CCT domain profile. 726 768 IPR010402 GO:0005515
Cmo03g00476 780 MobiDBLite consensus disorder prediction 213 296 - -
Cmo03g00476 780 CDD psREC_PRR 91 194 - -
Cmo03g00476 780 MobiDBLite consensus disorder prediction 763 780 - -
Cmo03g00476 780 SMART REC_2 89 204 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01182 Cmo-Chr2:7085038 Cmo03g00476 Cmo-Chr3:5175369 2.24E-17 dispersed
Cmo03g00476 Cmo-Chr3:5175369 Cmo14g02228 Cmo-Chr14:15799629 8.21E-18 dispersed
Cmo03g00476 Cmo-Chr3:5175369 Cmo07g00992 Cmo-Chr7:4870674 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9385 PF00072 Response_reg 2.40E-20 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00476 K12129 - csv:101210765 1305.81