Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00476 | ATGAATGCTCATGCTAGCAGGCAGAATGGGTTAAGAGAAACAAGTCACCACGCACGGGATGGTAATGGAATCGTGAACAGTGGTGTATCTGGCAGGGAACAGAGCCCAGTTGAGGAAAACGAGTTGAAGGTCAATGGATTAACTAGAAATACAGAAGATGGACGAAAATCCACCGTTCAAGCCCAGGACATTCTGCAAATACATCAGCAGCAGCATCCTCAAGGGTCTATGGTCTGCTGGGAGAGATTTCTTCATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAATGATGATTCCACCCGGCACCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTGCATGCATGGAAGATGCTTGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGCTTATCTGGCATTGGTCTTCTATGCAAGATTATGAGCCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTCAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAGGCGTTGAAAAAACAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAATATTGATGATGGAAGTGACGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGAATAAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCTAATAATGTGCCAATTGTTTTAACAGCAGGGTGCCAGGGGCAGAAAAAGCAACTTGTTGAATTAGGCGTGCACGGCGATTTAGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAATTAACAGGAAACAGAACATTATGCTTGAGATCGGGTCCAGTGGATTCAATGAGCAGTTCAACAAAGCAGATCTTGACCTCAACTCTGATAGCCCATGCAGCAAACTTAAGTGCGAGGAAACAACTGTTACTGGTCTTGCTACTAATCTTACTGATTCTAAGATGGATGTCACTGTGTTTGAGGTGCCGAGCAACCATCCCAAGACTACAGATATTAAGAATAAAAGTGTTACAGATTCAGAAGATTTTCCATGCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAGCGACAGGGAAAGCTGTCCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCATTTTCTAGGTACAATGCTGGCTCGAATTCTAACAAGACTCCAACTGGGAATGCCGGAAGTAGCTCTCCACCTGTCAATGGCAGAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGTTCTCATTCAAGTGGTAACCCTCCCAATCAATGTTCAAATGGAGATAGCAATAATATCGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCCATAGTTATTAATAACAAGTCAGCAATGGCATCAACTGTCAACTGTTTACACCCATCGGCAGCTTTCCAACCTGTTAAGAATGACAGTCTATCCGTTCCTCAGAAAGCTGATAACGTCATTAATGTTACAACTACAGCAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAGATGCAGCAACCTTGTCACCCGTATGATCCCACTCATCAGTTTGTCCACAATGTGCAACGAGTGTCATCTGACCATAATGATTATTCCTTAAAGAAAACATCTGCAGCTATCGCGCATTGTGGGTCAACCAATGTGTTAAATGGCCATGTAGAAGGTAATGCGGCTAATTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCTGCAATGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCAGAAAAGCCGAAGTGGAGATGCCAGTGGAAGTGGAAGTGGGAGTGGAAATGGAAGCGGGAACAAAGTGGACCTAAGCAAAGTTTCACAAAGGGAAGCTGCCCTGACTAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTCCGATACCAAAGCAGAAAGCGATTAGCAGAACAGAGACCTCGTGTCCGGGGACAGTTTGTGCGACAAAACACGAGCGAAAACACAAGCAATGCAGGAGATGGCTAA | 2343 | 43.7 | MNAHASRQNGLRETSHHARDGNGIVNSGVSGREQSPVEENELKVNGLTRNTEDGRKSTVQAQDILQIHQQQHPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKGVEKTDNNTGSNDEEEDNESIGFNIDDGSDDGSGTQSSWTKQAIEVESPRPVSASAWNKKRERPDSTCAQVVHSNADAFANNVPIVLTAGCQGQKKQLVELGVHGDLDLQLELSTEHPTKLINRKQNIMLEIGSSGFNEQFNKADLDLNSDSPCSKLKCEETTVTGLATNLTDSKMDVTVFEVPSNHPKTTDIKNKSVTDSEDFPCLELGLKRLRGVQATGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSSSPPVNGREVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVINNKSAMASTVNCLHPSAAFQPVKNDSLSVPQKADNVINVTTTAMQAQSNFVHRESQMQQPCHPYDPTHQFVHNVQRVSSDHNDYSLKKTSAAIAHCGSTNVLNGHVEGNAANYSVNGSASGSNHGSNGQNGSCNAVNAGGLNMESDNGIGQKSRSGDASGSGSGSGNGSGNKVDLSKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG | 780 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5175369 | 5182857 | - | CmoCh03G004760.1 | Cmo03g00476 | 377939 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00476 | 780 | Gene3D | - | 88 | 255 | - | - | |
Cmo03g00476 | 780 | ProSiteProfiles | Response regulatory domain profile. | 90 | 208 | IPR001789 | GO:0000160 | |
Cmo03g00476 | 780 | Pfam | Response regulator receiver domain | 91 | 202 | IPR001789 | GO:0000160 | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 467 | 533 | - | - | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cmo03g00476 | 780 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 | 26 | 756 | - | - | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 736 | 751 | - | - | |
Cmo03g00476 | 780 | Pfam | CCT motif | 726 | 768 | IPR010402 | GO:0005515 | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 664 | 780 | - | - | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 451 | 533 | - | - | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 664 | 721 | - | - | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 261 | 276 | - | - | |
Cmo03g00476 | 780 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 26 | 756 | IPR045279 | GO:0009736 | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 213 | 230 | - | - | |
Cmo03g00476 | 780 | SUPERFAMILY | CheY-like | 87 | 213 | IPR011006 | - | |
Cmo03g00476 | 780 | ProSiteProfiles | CCT domain profile. | 726 | 768 | IPR010402 | GO:0005515 | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 213 | 296 | - | - | |
Cmo03g00476 | 780 | CDD | psREC_PRR | 91 | 194 | - | - | |
Cmo03g00476 | 780 | MobiDBLite | consensus disorder prediction | 763 | 780 | - | - | |
Cmo03g00476 | 780 | SMART | REC_2 | 89 | 204 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01182 | Cmo-Chr2:7085038 | Cmo03g00476 | Cmo-Chr3:5175369 | 2.24E-17 | dispersed | |
Cmo03g00476 | Cmo-Chr3:5175369 | Cmo14g02228 | Cmo-Chr14:15799629 | 8.21E-18 | dispersed | |
Cmo03g00476 | Cmo-Chr3:5175369 | Cmo07g00992 | Cmo-Chr7:4870674 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9385 | PF00072 | Response_reg | 2.40E-20 | CL0304 | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00476 | K12129 | - | csv:101210765 | 1305.81 |