Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00498 ATGGGTCGTTCTCATTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGCTCTTCACCAAGCCTTTTTGCTTTGGAGATACTGACCTCCGTGATGTTGCTGCAATCAATGCGTTATTTATTGCTCTTGGCTACCCTCCTCTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAGTGTGTGTTCTCGAATATAACAGCGATACAACTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTAGACCAGTTTGAGTCAATAATATCAATAGATCTTAGTAATAACCATATTGGAGGGATTATTCCATCTGCATTGCCTGCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAGTTTACTGGAAGCATTCCCTCTGCTCTTGCCTCTCTAACACAATTGATGGACTTGTCAATAAACAACAACCTTCTTACCGGGGCAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAACAACTTGGACTTGTCGGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCCATGGCAGATTTGTTCTCCCTTACTACATTGCACTTGCAGAACAATCGACTTTCTGGGATGCTCGACGTTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTCCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACCATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCGCCTGTTACTGCGGGACGACCAACCAGACAGACGGGTGCGGGTCAGCCATTGTCATCGGGGAGTCCTGAATCCGATGGAGGAAGGAGTTTTTTCTCTGGTAAGCGGATCATTGGGATTGTTATTATTGGTGCAGTAATATTAGTGGCATTGGGAGCTTGTATTCTGTTATCGGTATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGAGACGAAGATGGTTCGTGAAAATGCTGATATGGCTTCTAAAGATAAGCCGAAACTCACGAAGCCCTCGGTTGACGTTGACGACGTGGAGAAAGGTCGAAGGGAGACCACTCTTAAGCCAGTTGATAGAGACGGGATGAAGGATAGAATAATGGATTATACCTCCCCAAAGCTACACGAAAACCCATTTGCCTCCAATACGAGCTTTCGTGAAGACCACACGGAGAGTTTTCGTGATAGACGGGATGCAAATGGGAAGAGAAAAGATGCCTCCAATATGAGTTTCCGTGACGACTATACGGAGAGTTCGAGCGTAAGCATAGATGAGTTGCTTGCACGACCTCCTCCTCCCCCTCCATTTTCGCTCCTTTCAACTCAGGAGATTGCAAAACCAATTGTGACAGCCGACATACCTAGTCGAGTACCTAAAAAACTAAACACGAGTTCTTTAAAAGTTTTCACGATCGCGTCGCTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAAAGGCATGCTTGGTAGTGTCTATAGAGCTGAACTACCAAATGGAAGGCTTTTGGCCGTTAAAAAACTGGATGGATCCTCGTTGACTCATTGGAGCGACGATGAATTTCACAACCTCGTGTCTGATATATGCGAAATTCGGCATGATAACATTGTGGAGCTTAAGGGCTATTGTGCTGAGTATGGACAATACCTACTCATTTATGAGTATTGCGAAAATGGCACACTCTATGAAGCACTCCACGTCGACAAGGAGATGCATCAAATGCTTTCGTGGAACGTGCGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTACATGAGGCCTGTCAGCCGCCAATTGTGCACCAAAATTTTAAGTCTGCTAACATTCTCCTGGACAATGAGCTAAAAGCACAGCTCTCTGACTCTGGCCTTGCTTCACTGCTTGATAATCAGTCGTCTGTACGATTCCTCCCAACTCATGGTTATAGTGCTCCGGAATTTGAGTCGGGAACTTACACGTACCAAAGCGATGTTTTTAGCTTTGGAGTTGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCGTGTGATCGAACACTGCCTCGAGGAGAGCAATATCTTGTTCGATGGGCTATTCCAAGGCTCCATGATATTGATGCGTTATCGAGAATGGTCGATCCATCACTTAAGGGCACATATCCTATTAAGTCGTTATCTCGGTTCGCCGATATTATTTCATCTTGTATAATGAGAGAGCCCGAATTTCGACCCCCGATCTCGGAAATTGTACAGGAACTCTTACAAATGATCTAG 2316 45.08 MGRSHWNLFMKILIGLLLLFTKPFCFGDTDLRDVAAINALFIALGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISIDLSNNHIGGIIPSALPATLRSFSLSANQFTGSIPSALASLTQLMDLSINNNLLTGAIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNRLSGMLDVLQDLPLSDLNIENNLFSGPIPPKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTAGRPTRQTGAGQPLSSGSPESDGGRSFFSGKRIIGIVIIGAVILVALGACILLSVCLKRRSKHREETKMVRENADMASKDKPKLTKPSVDVDDVEKGRRETTLKPVDRDGMKDRIMDYTSPKLHENPFASNTSFREDHTESFRDRRDANGKRKDASNMSFRDDYTESSSVSIDELLARPPPPPPFSLLSTQEIAKPIVTADIPSRVPKKLNTSSLKVFTIASLQQYTNSFSEDNLLGKGMLGSVYRAELPNGRLLAVKKLDGSSLTHWSDDEFHNLVSDICEIRHDNIVELKGYCAEYGQYLLIYEYCENGTLYEALHVDKEMHQMLSWNVRVRIALGAARALEYLHEACQPPIVHQNFKSANILLDNELKAQLSDSGLASLLDNQSSVRFLPTHGYSAPEFESGTYTYQSDVFSFGVVMLELLTGRKSCDRTLPRGEQYLVRWAIPRLHDIDALSRMVDPSLKGTYPIKSLSRFADIISSCIMREPEFRPPISEIVQELLQMI 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5278539 5283896 + CmoCh03G004980.1 Cmo03g00498 377961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00498 771 MobiDBLite consensus disorder prediction 266 290 - -
Cmo03g00498 771 MobiDBLite consensus disorder prediction 272 290 - -
Cmo03g00498 771 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 771 - -
Cmo03g00498 771 ProSiteProfiles Protein kinase domain profile. 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00498 771 PANTHER LEUCINE RICH REPEAT KINASE 2 9 771 - -
Cmo03g00498 771 Gene3D Ribonuclease Inhibitor 44 253 IPR032675 -
Cmo03g00498 771 Gene3D Phosphorylase Kinase; domain 1 465 574 - -
Cmo03g00498 771 SUPERFAMILY L domain-like 42 237 - -
Cmo03g00498 771 MobiDBLite consensus disorder prediction 403 427 - -
Cmo03g00498 771 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Cmo03g00498 771 Gene3D Transferase(Phosphotransferase) domain 1 575 771 - -
Cmo03g00498 771 Pfam Protein kinase domain 498 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00498 771 MobiDBLite consensus disorder prediction 330 387 - -
Cmo03g00498 771 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Cmo03g00498 771 MobiDBLite consensus disorder prediction 330 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00498 - - - cmo:103484543 1189.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00498 Cmo-Chr3:5278539 Cmo14g01254 Cmo-Chr14:10564460 8.76E-172 dispersed
Cmo11g01937 Cmo-Chr11:13388276 Cmo03g00498 Cmo-Chr3:5278539 0 wgd
Cmo19g01004 Cmo-Chr19:8914284 Cmo03g00498 Cmo-Chr3:5278539 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo18g00544 . 384 677 Strubbelig Receptor Gene Family AT1G11130 54.1 7.6e-86 315.8
Cmo13g00445 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.9e-85 313.2
Cmo17g00626 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.1e-83 307.8
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo01g00024 CCT 1 710 Strubbelig Receptor Gene Family AT1G53730 61.6 3.5e-211 732.3
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G53730 60.3 1.5e-201 700.3
Cmo17g00626 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-176 616.7
Cmo08g00808 CCT,CST 33 788 Strubbelig Receptor Gene Family AT1G53730 54.3 1.0e-173 607.8
Cmo01g00024 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 51.3 4.8e-181 632.1
Cmo17g00626 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 52.9 2.6e-155 546.6
Cmo08g00808 CCT,CST 42 786 Strubbelig Receptor Gene Family AT3G14350 50.9 2.7e-152 536.6
Cmo18g00544 . 332 707 Strubbelig Receptor Gene Family AT4G22130 82.2 8.4e-176 614.4
Cmo13g00445 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.9 7.6e-169 591.3
Cmo01g00024 CCT 404 726 Strubbelig Receptor Gene Family AT4G22130 63.4 2.1e-118 423.7
Cmo14g01254 . 389 720 Strubbelig Receptor Gene Family AT4G22130 62.5 1.4e-117 421.0
Cmo17g00626 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 3.0e-117 419.9
Cmo08g00808 CCT,CST 446 790 Strubbelig Receptor Gene Family AT4G22130 60.0 5.0e-112 402.5
Cmo11g01937 CST 393 717 Strubbelig Receptor Gene Family AT4G22130 56.8 1.8e-106 384.0
Cmo19g01004 CST 483 778 Strubbelig Receptor Gene Family AT4G22130 60.6 4.5e-105 379.4
Cmo04g01041 . 416 733 Strubbelig Receptor Gene Family AT4G22130 55.7 6.8e-101 365.5
Cmo03g00498 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.1 9.2e-98 355.1
Cmo15g01506 . 364 677 Strubbelig Receptor Gene Family AT4G22130 56.4 1.7e-96 350.9
Cmo14g00436 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 1.2e-92 338.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74177 PF00069 Pkinase 2.70E-37 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00498 Cmo_Chr03 FPKM 5.819343 7.354232 0.587873 0.556266 0.0 0.0 0.0 0.0 0.220863 0.0