Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00498 ATGGGTCGTTCTCATTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGCTCTTCACCAAGCCTTTTTGCTTTGGAGATACTGACCTCCGTGATGTTGCTGCAATCAATGCGTTATTTATTGCTCTTGGCTACCCTCCTCTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAGTGTGTGTTCTCGAATATAACAGCGATACAACTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTAGACCAGTTTGAGTCAATAATATCAATAGATCTTAGTAATAACCATATTGGAGGGATTATTCCATCTGCATTGCCTGCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAGTTTACTGGAAGCATTCCCTCTGCTCTTGCCTCTCTAACACAATTGATGGACTTGTCAATAAACAACAACCTTCTTACCGGGGCAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAACAACTTGGACTTGTCGGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCCATGGCAGATTTGTTCTCCCTTACTACATTGCACTTGCAGAACAATCGACTTTCTGGGATGCTCGACGTTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTCCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACCATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCGCCTGTTACTGCGGGACGACCAACCAGACAGACGGGTGCGGGTCAGCCATTGTCATCGGGGAGTCCTGAATCCGATGGAGGAAGGAGTTTTTTCTCTGGTAAGCGGATCATTGGGATTGTTATTATTGGTGCAGTAATATTAGTGGCATTGGGAGCTTGTATTCTGTTATCGGTATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGAGACGAAGATGGTTCGTGAAAATGCTGATATGGCTTCTAAAGATAAGCCGAAACTCACGAAGCCCTCGGTTGACGTTGACGACGTGGAGAAAGGTCGAAGGGAGACCACTCTTAAGCCAGTTGATAGAGACGGGATGAAGGATAGAATAATGGATTATACCTCCCCAAAGCTACACGAAAACCCATTTGCCTCCAATACGAGCTTTCGTGAAGACCACACGGAGAGTTTTCGTGATAGACGGGATGCAAATGGGAAGAGAAAAGATGCCTCCAATATGAGTTTCCGTGACGACTATACGGAGAGTTCGAGCGTAAGCATAGATGAGTTGCTTGCACGACCTCCTCCTCCCCCTCCATTTTCGCTCCTTTCAACTCAGGAGATTGCAAAACCAATTGTGACAGCCGACATACCTAGTCGAGTACCTAAAAAACTAAACACGAGTTCTTTAAAAGTTTTCACGATCGCGTCGCTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAAAGGCATGCTTGGTAGTGTCTATAGAGCTGAACTACCAAATGGAAGGCTTTTGGCCGTTAAAAAACTGGATGGATCCTCGTTGACTCATTGGAGCGACGATGAATTTCACAACCTCGTGTCTGATATATGCGAAATTCGGCATGATAACATTGTGGAGCTTAAGGGCTATTGTGCTGAGTATGGACAATACCTACTCATTTATGAGTATTGCGAAAATGGCACACTCTATGAAGCACTCCACGTCGACAAGGAGATGCATCAAATGCTTTCGTGGAACGTGCGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTACATGAGGCCTGTCAGCCGCCAATTGTGCACCAAAATTTTAAGTCTGCTAACATTCTCCTGGACAATGAGCTAAAAGCACAGCTCTCTGACTCTGGCCTTGCTTCACTGCTTGATAATCAGTCGTCTGTACGATTCCTCCCAACTCATGGTTATAGTGCTCCGGAATTTGAGTCGGGAACTTACACGTACCAAAGCGATGTTTTTAGCTTTGGAGTTGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCGTGTGATCGAACACTGCCTCGAGGAGAGCAATATCTTGTTCGATGGGCTATTCCAAGGCTCCATGATATTGATGCGTTATCGAGAATGGTCGATCCATCACTTAAGGGCACATATCCTATTAAGTCGTTATCTCGGTTCGCCGATATTATTTCATCTTGTATAATGAGAGAGCCCGAATTTCGACCCCCGATCTCGGAAATTGTACAGGAACTCTTACAAATGATCTAG 2316 45.08 MGRSHWNLFMKILIGLLLLFTKPFCFGDTDLRDVAAINALFIALGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISIDLSNNHIGGIIPSALPATLRSFSLSANQFTGSIPSALASLTQLMDLSINNNLLTGAIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNRLSGMLDVLQDLPLSDLNIENNLFSGPIPPKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTAGRPTRQTGAGQPLSSGSPESDGGRSFFSGKRIIGIVIIGAVILVALGACILLSVCLKRRSKHREETKMVRENADMASKDKPKLTKPSVDVDDVEKGRRETTLKPVDRDGMKDRIMDYTSPKLHENPFASNTSFREDHTESFRDRRDANGKRKDASNMSFRDDYTESSSVSIDELLARPPPPPPFSLLSTQEIAKPIVTADIPSRVPKKLNTSSLKVFTIASLQQYTNSFSEDNLLGKGMLGSVYRAELPNGRLLAVKKLDGSSLTHWSDDEFHNLVSDICEIRHDNIVELKGYCAEYGQYLLIYEYCENGTLYEALHVDKEMHQMLSWNVRVRIALGAARALEYLHEACQPPIVHQNFKSANILLDNELKAQLSDSGLASLLDNQSSVRFLPTHGYSAPEFESGTYTYQSDVFSFGVVMLELLTGRKSCDRTLPRGEQYLVRWAIPRLHDIDALSRMVDPSLKGTYPIKSLSRFADIISSCIMREPEFRPPISEIVQELLQMI 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5278539 5283896 + CmoCh03G004980.1 Cmo03g00498 377961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00498 771 MobiDBLite consensus disorder prediction 266 290 - -
Cmo03g00498 771 MobiDBLite consensus disorder prediction 272 290 - -
Cmo03g00498 771 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 771 - -
Cmo03g00498 771 ProSiteProfiles Protein kinase domain profile. 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00498 771 PANTHER LEUCINE RICH REPEAT KINASE 2 9 771 - -
Cmo03g00498 771 Gene3D Ribonuclease Inhibitor 44 253 IPR032675 -
Cmo03g00498 771 Gene3D Phosphorylase Kinase; domain 1 465 574 - -
Cmo03g00498 771 SUPERFAMILY L domain-like 42 237 - -
Cmo03g00498 771 MobiDBLite consensus disorder prediction 403 427 - -
Cmo03g00498 771 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Cmo03g00498 771 Gene3D Transferase(Phosphotransferase) domain 1 575 771 - -
Cmo03g00498 771 Pfam Protein kinase domain 498 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00498 771 MobiDBLite consensus disorder prediction 330 387 - -
Cmo03g00498 771 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Cmo03g00498 771 MobiDBLite consensus disorder prediction 330 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00498 Cmo-Chr3:5278539 Cmo14g01254 Cmo-Chr14:10564460 8.76E-172 dispersed
Cmo11g01937 Cmo-Chr11:13388276 Cmo03g00498 Cmo-Chr3:5278539 0 wgd
Cmo19g01004 Cmo-Chr19:8914284 Cmo03g00498 Cmo-Chr3:5278539 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74177 PF00069 Pkinase 2.70E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00498 - - cmo:103484543 1189.87