Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00525 ATGGGAGTTAATTGCAGAAGCGTTGTTGGGTTTTGTCAATTTTTAGTCATTTCAGCCTTCCTCTGTTCTTCTCCTCTGTTTTGCGATGCTGCAGATTCAATTGCGAGGGGTAGAGAGCTAAGAGATAGTACTAATGAAACCCTCATATCCTTGAATGAGTCCTACGAACTGGGATTCTTCAGCCCCACTAATTCTTCATCACGGTATGTCGGAATATGGTATCACAAGATCGAGGAACTGTCTGTTATTTGGGTTGCGAATAGACAGACGCCACTTTTTAATAGAGATGGGGTTTTGAAAATCGGAGATGACGGGAACTTGGTCGTTCTGGACAGTAACAACGTCTCTGTTTGGACAAGCAATATCACAGCGAATGCTTCTGATCCCAGAAATTTAACTCTTCATAACAGTGGAGAATTGATTCTCTCGAGCGGAGATGACTCGTCGAAAGTTCATTGGAGCAGCTTCATAAACCCCACAGATACGTTTCTTCCGAATATGGAGGTGAAAGTGAACGCAGATATGGGCGAGAAACGAATGTTTATGTCGTGGAAATCAGAGACAAATCCGGCTGTCGGAAACTTTTGTCTGGGTGTGGATCCTCGTGGAGCCGTCCAGATTATCATTTGGAATGGAGATAAACGATGGTGGAGAAGCGGGCACTGGGATAGGCAGATTTTTTCTGGGATTCCAACTATGCGTTCTACGACGTTGTACGGCTTCAAGGTTCTTCCCGACAGTGAAAACAACATTAGCGTAACTTTTCATGCACTTAATGATTCCGATAAGCTGAAATTTCAAATCCGGTGGGATGGAAAAGAAGCACAGCAACGATGGAACGAAGTAAATCGCAAATGGGAAACGGTTCGCTTGCTTCCTTCTCACGATTGCGATTTCTATAACTTTTGTGGGGATTTTGGGGTATGTTCTGAAACGAGTCGTGTTAAGTGTAGCTGCCCTCAAGGGTTTACACCCAAAAACATAGATAGATGGGATGGTTGTGAGAGGAGGACTCCATTGCTTCAACAGAGAATGAACAGTAGTCAAAATGGAACTATTGAAGACAGTGAAGAAGATGGATTTGTAGCCGTACCATTTGTGAAATTGCCCGATTTCATAAGTGGAGTATTTGTGGTGGATTCATGTAGAGATAGATGTTTGAACAGTTCATCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGGTGCGTAACTTGGGATGGACCTTTAATTGATATTCAGAAATTTGATGGCGTTGGGAATACTTTAAACATTCGTCTGGCTCATTCAGATTTGATAACCGGAGATGGCGAGGGAAAATTGTCGACCGGTGTGATTGTATCGATATGTTTAGGAGCAGCAGCTGGCATAGCCATATTAGCATTGCTGATATGGAAATTCAGAGGCATAAGGGAAGGCTCACCGGCTGCTGCTTCAAGTAAACCTCAGAACAAAGCTGAAGTACCAATGTTTGATCTAAGCAAGAGTGGAGAGTTTTCAGTACAGGTTTCAGGGCCATACGAATTAGGCATAGAAGGCGAACAATTGAATGGGCCAGATTTGCCCATGTTCAATTTCAACTGTGTAGCTGTGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGGCAGGGCGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCTGTGAAGAGGCTTTCAGTCCGGTCTGGACAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTGATAGGAAAGTTGCAGCATCGAAACCTCGTCAGGCTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCGAACAAGCAGGCGCTACTCGATTGGAAAAAACGGTTGTCGATCGTAGAGGGAATCGCGCGAGGGCTACTATACCTTCATAGAGATTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAATATTTTGTTAGACGAAGACATGAATCCAAAGATATCGGACTTTGGCATGGCTAGAATATTCGGTGGAAACCAAAACGAGGCCACAAATACCATTCGAGTTGTTGGGACATACGGTTACATGGCTCCAGAGTATGCAATGGAAGGTTTATTTTCGGTGAAATCGGACGTGTATAGTTTTGGTGTATTATTGTTGGAATTAATCTGTGGTCGGAGGAACACTAGCTTTCGGTCGACTGAATACTTAACACTTATTAGCTATGCTTGGAAACTTTGGAACGAAGGAAGAGCGATCGAACTTCTCGACCCATCAATTCGCGACACATCGCCCGAGAATGAAGTATTGAAATGCATACATGTAGCAATGTTGTGTGTACAAGACTCTCCTGCTTATAGACCAACACTGCAATCCTTGGTGCTAATGCTGGAGAGTGAATCTTTATCACTGCCACAGCCAAGACAGCCCACCTATACTTCCACGAGAGCCTCGATCGATACGGACTTGTTTACAGAAGGCCACGACATTGTATCGTCGAACGATGTAACGGTAACAATGCTGGATGGTCGATAG 2565 43.74 MGVNCRSVVGFCQFLVISAFLCSSPLFCDAADSIARGRELRDSTNETLISLNESYELGFFSPTNSSSRYVGIWYHKIEELSVIWVANRQTPLFNRDGVLKIGDDGNLVVLDSNNVSVWTSNITANASDPRNLTLHNSGELILSSGDDSSKVHWSSFINPTDTFLPNMEVKVNADMGEKRMFMSWKSETNPAVGNFCLGVDPRGAVQIIIWNGDKRWWRSGHWDRQIFSGIPTMRSTTLYGFKVLPDSENNISVTFHALNDSDKLKFQIRWDGKEAQQRWNEVNRKWETVRLLPSHDCDFYNFCGDFGVCSETSRVKCSCPQGFTPKNIDRWDGCERRTPLLQQRMNSSQNGTIEDSEEDGFVAVPFVKLPDFISGVFVVDSCRDRCLNSSSCVAYSDAPGIGCVTWDGPLIDIQKFDGVGNTLNIRLAHSDLITGDGEGKLSTGVIVSICLGAAAGIAILALLIWKFRGIREGSPAAASSKPQNKAEVPMFDLSKSGEFSVQVSGPYELGIEGEQLNGPDLPMFNFNCVAVATDNFSEENKLGQGGFGPVYKGKLPCGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIVEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPSIRDTSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESLSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTVTMLDGR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5400189 5403649 + CmoCh03G005250.1 Cmo03g00525 377988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00525 854 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Cmo03g00525 854 PIRSF SRK 5 854 IPR024171 GO:0004674
Cmo03g00525 854 SMART serkin_6 536 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00525 854 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 14 854 - -
Cmo03g00525 854 SMART blect_4 39 159 IPR001480 -
Cmo03g00525 854 Gene3D - 27 156 IPR036426 -
Cmo03g00525 854 ProSiteProfiles Protein kinase domain profile. 536 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00525 854 Pfam Protein tyrosine and serine/threonine kinase 539 805 IPR001245 GO:0004672|GO:0006468
Cmo03g00525 854 SMART ntp_6 356 427 IPR003609 -
Cmo03g00525 854 CDD PAN_AP_plant 354 428 - -
Cmo03g00525 854 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Cmo03g00525 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Cmo03g00525 854 SUPERFAMILY Protein kinase-like (PK-like) 522 830 IPR011009 -
Cmo03g00525 854 Gene3D Phosphorylase Kinase; domain 1 511 611 - -
Cmo03g00525 854 CDD B_lectin 43 159 IPR001480 -
Cmo03g00525 854 CDD STKc_IRAK 542 808 - -
Cmo03g00525 854 Pfam PAN-like domain 356 413 IPR003609 -
Cmo03g00525 854 Gene3D Transferase(Phosphotransferase) domain 1 612 819 - -
Cmo03g00525 854 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 14 854 - -
Cmo03g00525 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Cmo03g00525 854 Pfam Domain of unknown function (DUF3403) 809 854 IPR021820 GO:0004674
Cmo03g00525 854 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cmo03g00525 854 Pfam D-mannose binding lectin 82 185 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00525 Cmo-Chr3:5400189 Cmo13g00711 Cmo-Chr13:7190230 0 dispersed
Cmo13g00707 Cmo-Chr13:7177217 Cmo03g00525 Cmo-Chr3:5400189 0 wgd
Cmo18g00314 Cmo-Chr18:2010095 Cmo03g00525 Cmo-Chr3:5400189 5.69E-169 wgd
Cmo19g00979 Cmo-Chr19:8813769 Cmo03g00525 Cmo-Chr3:5400189 3.03E-58 wgd
Cmo03g00525 Cmo-Chr3:5400189 Cmo07g00278 Cmo-Chr7:1365082 0 wgd
Cmo03g00525 Cmo-Chr3:5400189 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74178 PF07714 PK_Tyr_Ser-Thr 2.30E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00525 - - csv:101207147 1474.14