Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00537 ATGAAAGGTACAACAGATATTTCAATCATCTGTTCTTATTTCTTCAAGAAGAAATCTTCGCCAGTTTCGTTGCTACTTCTGATTTCAATCTTTGGGCTTAGCCGCTCCCATCATTTCGAACCAAGATATAGGTTCCACATCTGTTCAGCGCCAAGTAATATCACAACCAACTCTAATCTGGGTTCAGATCTCATTGGCATACTGGGTTCTTTATCCGAAGCTTCCTCCGACAGCTTCTACAATAGAACTTTCAATGGAATGTACGGCCTCGTACTCTGTCGTGGAGATATTCCCAACGATTACTGTCACAGTTGTGTCAGTACCGCAAGCAGAGATGTAAGGGATCGATGCCCTTTAAGAGTAAACGCCACAATATGGTACGATGAGTGCATGCTTAGATACTCAGACAAGAACTTCTTGGGAACCGTAGAGATCTCCCCGAGATTCCTCATGGGCGATTCAGGGAACCAGACATCGCCAGATGATAGTAATATTGATGGGTCTGCTCTGTTGTCTCAGATGGCCAGTGAAGCCTCAGTGTTACCGATGATGTACAAGGCAAACAAGTTGCATGGGACTGGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGCGTGTTGTAAATGTTTGATGGCTCTGTTGGAGGAGATCGGGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGAGCCCAAGTTGTAGCATAACGTATGAGAAATATCTTTTCTATTCTCTATCAGCTTCGCCTCAAGGTGATTCAAATCTTATAATTTTTTTGTTTCGTTGTTTGCTAAATTCTTCTACATCTTATAATTTTATACTAAATCAAGCAGGATTGAGCGCCAAAGTGATTGCAGTAATCATTATATCAACAGTTGCAGCAGTAGCATTTCTTGCAAGTCTGTTGTATTGTTTACTTCTGTCAAAGAAGAGAAGACAACATCCAGAGATGGACACAGGTGAACAAGTTCTGTTGCGAAATTTGGGAGATGCTAAGTCTGCAGAATTGATGAAGCAAAATTTGCATTCAAGAGATGGAGACAATGATGAAGAGATGCATTACTTCAGTTTCATCACCCTACAGGCTGCCACAAACAACTTTGCAGATGCAAATAGACTTGGAGAAGGCGGGTTTGGCCCAGTTTTCAAGGGAAAGCTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCAGTGAAGTCAAGCCAAGGTCACGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTGGTCAAGCTTTTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTATTATTTGATCCAGTTAAATGCAAACAACTCGATTGGCTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTATATCTGCACGAAGACTCTCGGCTAAAAATCGTTCATCGGGATTTAAAAGCTAGCAATGTGTTGTTGGATGATGAGATGAATGCAAAGATATCAGACTTTGGAACGGCCAGAATATTCGGAGGCAAGCAAGTTGAGGCTAGCACCAACAGGGTTGTTGGCACTTTTGGATACATGGCACCAGAATACGCAATGGAGGGAGTGTTTTCTGTAAAATCGGATGTTTATAGTTTTGGGATCTTAATGCTAGAAGTGATAAGCGGGAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAAAGCCTTCTATCACAGGCATGGCAACTATGGAAGGAAGGCAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGATTGTTCTTTAAGCGAAGCTCTAAGATGGATCCAAATCGGGCTCCTGTGCGTACAAGAAGACCCTAACATCAGACCGACCATGTCAATGGTCGTTCTAATGCTTGGAAGCAAATCGATTCCTCTTCCTCAACCGTCGAAACCTCCATTCTTTCCGATTGGCTTTCCGGCGTCCGCCGGTCAATCTTCAACGACCTTACTGGGAACGGGGTATCTCTCCACACAATCGTCTACCACGGCTTCTATCTAG 2070 43.14 MKGTTDISIICSYFFKKKSSPVSLLLLISIFGLSRSHHFEPRYRFHICSAPSNITTNSNLGSDLIGILGSLSEASSDSFYNRTFNGMYGLVLCRGDIPNDYCHSCVSTASRDVRDRCPLRVNATIWYDECMLRYSDKNFLGTVEISPRFLMGDSGNQTSPDDSNIDGSALLSQMASEASVLPMMYKANKLHGTGYGLVQCTRDLNSSACCKCLMALLEEIGQVYKGRVGWRILSPSCSITYEKYLFYSLSASPQGDSNLIIFLFRCLLNSSTSYNFILNQAGLSAKVIAVIIISTVAAVAFLASLLYCLLLSKKRRQHPEMDTGEQVLLRNLGDAKSAELMKQNLHSRDGDNDEEMHYFSFITLQAATNNFADANRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVKLLGCCLEGEEKLLVYEYMANTSLDALLFDPVKCKQLDWLKRNNIINGVAKGILYLHEDSRLKIVHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSVKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGDCSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIPLPQPSKPPFFPIGFPASAGQSSTTLLGTGYLSTQSSTTASI 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5445392 5448469 + CmoCh03G005370.1 Cmo03g00537 378000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00537 689 Pfam Salt stress response/antifungal 52 136 IPR002902 -
Cmo03g00537 689 Pfam Salt stress response/antifungal 186 244 IPR002902 -
Cmo03g00537 689 SUPERFAMILY Protein kinase-like (PK-like) 353 666 IPR011009 -
Cmo03g00537 689 ProSiteProfiles Gnk2-homologous domain profile. 42 139 IPR002902 -
Cmo03g00537 689 SMART serkin_6 371 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00537 689 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 671 - -
Cmo03g00537 689 Gene3D Transferase(Phosphotransferase) domain 1 447 647 - -
Cmo03g00537 689 ProSiteProfiles Protein kinase domain profile. 371 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00537 689 Gene3D - 149 246 IPR038408 -
Cmo03g00537 689 Gene3D - 42 139 IPR038408 -
Cmo03g00537 689 ProSiteProfiles Gnk2-homologous domain profile. 145 246 IPR002902 -
Cmo03g00537 689 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 24 671 - -
Cmo03g00537 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Cmo03g00537 689 Pfam Protein tyrosine and serine/threonine kinase 375 640 IPR001245 GO:0004672|GO:0006468
Cmo03g00537 689 CDD STKc_IRAK 377 642 - -
Cmo03g00537 689 Gene3D Phosphorylase Kinase; domain 1 345 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00537 Cmo13g00734 CCT
Cmo03g00537 Cmo07g00286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00537 Cmo-Chr3:5445392 Cmo13g00734 Cmo-Chr13:7283531 1.39E-141 dispersed
Cmo18g00299 Cmo-Chr18:1945510 Cmo03g00537 Cmo-Chr3:5445392 5.45E-27 dispersed
Cmo03g00536 Cmo-Chr3:5440855 Cmo03g00537 Cmo-Chr3:5445392 0 tandem
Cmo03g00537 Cmo-Chr3:5445392 Cmo03g00538 Cmo-Chr3:5447627 9.44E-135 tandem
Cmo13g00736 Cmo-Chr13:7301424 Cmo03g00537 Cmo-Chr3:5445392 5.62E-32 wgd
Cmo19g00961 Cmo-Chr19:8740533 Cmo03g00537 Cmo-Chr3:5445392 7.82E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74181 PF07714 PK_Tyr_Ser-Thr 1.30E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00537 - - cpep:111804043 1251.11