Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00542 ATGGGAACCCCAAAATACCTTCTCTTCTTTTGCTTCATTCTCATCTTCTTCGTTTCTTTCACCATTTCTCAAATGGAAATCAAGGCCCACTTATGTTCAAACACCGGAAACTACACCGCCAACAGCATTTACAAGCAAAATCTCGATACCCTTCTTTCCTCCATCGCCTCCAACACCCAAATAGATTATGGGTTTTACAATTTCTCAGCTGGACAGCAATCCGACAGGGTGAACGCTATTGCCCTTTGTCTGGCTGATCTGACGGTGGAAAAATGCAGGAGCTGTCTCGCGACTTCGACCCGAAGGATTCTACAGGATTGTCCAAACCAGAAGGAGGCTATCGGATGGTACACCGATTGCATGATTCGTTACTCAAATGCATCCATATTTCGCATTGGGAATGATAGAGTGATTGGCCCAGCTTTTGTTTCGGGTCAGAAAGCATCAGATATAGATGGCTTCAATAAAGCACTCAGCAGCTTGTTACAAACACTCAGAAACCGGGCTGCGGCTGGGGATTCTAGACACAAATTCGCAGTGGGTGAAATTGCAGCACCCAATTTGGACAACATATTTGGGTTTCTTCAGTGTACTCCCGATTTGTCCGCTGTGGATTGCAATAACTGTCTTATGAAGGCCACTGAAAGAGTTCCAAATGGAAGTACGGGAACGAGGATATTTTCGACGAGCTGCTTTTTGAGATACGAGACTAATGATATTTTCTACAACACTCTGCCGCCGCCGCCGCCGCCGCCCGCTGCTGGTTCTGCTCCTTCCCCACCCATGTCGCCTCCGCCGCCGCCGCCTCCAACGCCAGGAAATTCTAGTAGAACTATTATTATCGTTGTGGTGTCCATCGTTTCCGCCATCATTCTCGTTGTTGCCATTTTCATCATTTTAAGGTTGAGGAAGCGGAAGATCAAAAGAACAGCCGACAAATTGGAAGGCATTCATATTGGAGACACCACCGACGAAATTAGCAGTGTGGAGACAATTCAATTTGATTTTGAGACCATTAAAGTTGCAACAAACGATTTCTCAAGTGAAAACAAGCTCGGACAGGGTGGATTCGGAGCTGTTTACAAGGGTAAGCTACCCAATGGACAACGTATAGCAGTGAAGAGACTTGCAAATAATTCACAACAAGGAGATGTTGAGTTCAAAAATGAAGTCCTTTTGGTGGTTAAGCTTCAACATCGGAACTTGGTTAGGCTGCTGGGATTTTGCTTGCAAAGAACTGAAAGACTTCTCATATATGAGTTTGTTCCAAATGCCAGCCTTGACCAGTTCATATTTGATTTTGAAAAAAGGAAGTTATTAGATTGGGAAAGACGATCCAAAATCATAAATGGTGTTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATACACCGTGATCTCAAAGCTAGTAATATTTTGTTGGATGAGGAAATGAATCCAAAGATTGCTGATTTTGGTATGGCTAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGGTATATGGCTCCGGAGTATTTGATGCACGGCCAATTTTCGGTAAAATCAGACGTCTTTAGCTTTGGCGTTTTGATTCTTGAAATCGTGAGTGGAAGGAAAAACAATTGCTTTCGTAATGGAGAAAAGATAGAAGATCTCTCGAGCTTTGCATGGAAAAACTGGAAGGCTGGAACAAGTAAAAATGTGATAGATTCAACCCTGAGCGTTGGTTCGAGTGTCGAGATGTTGAGATATATTCACATTGGATTATTGTGTGTTCAAGAGAACGCAGCAGATCGTCCCACGATGGCATCAGTAGTTTTGATGCTCAGTAGCTTCTCTCTCACTCTCCCTGTACCATCGGAACCAGCATTCTTCATGCATAGCAGCATTATTGACGAATCCAGCACACAATCCAAGGCAAACCGATGGTTGGAAATGAATGAAGCCACCCATTCTGAAAGCCTACCCCTCCAATCTTTATCCAATGAAGCTTCACTCAACCAGCTCCCCCCTCGTTAG 2040 43.97 MGTPKYLLFFCFILIFFVSFTISQMEIKAHLCSNTGNYTANSIYKQNLDTLLSSIASNTQIDYGFYNFSAGQQSDRVNAIALCLADLTVEKCRSCLATSTRRILQDCPNQKEAIGWYTDCMIRYSNASIFRIGNDRVIGPAFVSGQKASDIDGFNKALSSLLQTLRNRAAAGDSRHKFAVGEIAAPNLDNIFGFLQCTPDLSAVDCNNCLMKATERVPNGSTGTRIFSTSCFLRYETNDIFYNTLPPPPPPPAAGSAPSPPMSPPPPPPPTPGNSSRTIIIVVVSIVSAIILVVAIFIILRLRKRKIKRTADKLEGIHIGDTTDEISSVETIQFDFETIKVATNDFSSENKLGQGGFGAVYKGKLPNGQRIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRTERLLIYEFVPNASLDQFIFDFEKRKLLDWERRSKIINGVARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYLMHGQFSVKSDVFSFGVLILEIVSGRKNNCFRNGEKIEDLSSFAWKNWKAGTSKNVIDSTLSVGSSVEMLRYIHIGLLCVQENAADRPTMASVVLMLSSFSLTLPVPSEPAFFMHSSIIDESSTQSKANRWLEMNEATHSESLPLQSLSNEASLNQLPPR 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5460624 5463593 - CmoCh03G005420.1 Cmo03g00542 378005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00542 679 SMART serkin_6 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00542 679 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cmo03g00542 679 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 648 - -
Cmo03g00542 679 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Cmo03g00542 679 Pfam Salt stress response/antifungal 148 237 IPR002902 -
Cmo03g00542 679 Gene3D - 139 239 IPR038408 -
Cmo03g00542 679 Gene3D - 24 128 IPR038408 -
Cmo03g00542 679 Gene3D Transferase(Phosphotransferase) domain 1 422 623 - -
Cmo03g00542 679 MobiDBLite consensus disorder prediction 244 273 - -
Cmo03g00542 679 CDD STKc_IRAK 352 616 - -
Cmo03g00542 679 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Cmo03g00542 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Cmo03g00542 679 SUPERFAMILY Protein kinase-like (PK-like) 334 647 IPR011009 -
Cmo03g00542 679 ProSiteProfiles Protein kinase domain profile. 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00542 679 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Cmo03g00542 679 Gene3D Phosphorylase Kinase; domain 1 312 421 - -
Cmo03g00542 679 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 648 - -
Cmo03g00542 679 Pfam Protein tyrosine and serine/threonine kinase 349 613 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00538 Cmo-Chr3:5447627 Cmo03g00542 Cmo-Chr3:5460624 0 dispersed
Cmo03g00542 Cmo-Chr3:5460624 Cmo07g00285 Cmo-Chr7:1395425 0 dispersed
Cmo18g00297 Cmo-Chr18:1926313 Cmo03g00542 Cmo-Chr3:5460624 4.66E-138 dispersed
Cmo03g00541 Cmo-Chr3:5458551 Cmo03g00542 Cmo-Chr3:5460624 6.07E-62 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74184 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00542 - - csv:116404634 1061.21