Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00550 ATGTTCGATCAAGATATGTTCCATGCACTACACCCTCACCATCATATGTTTGACATGGCGTTTAACACCTCCGAAAACGAGTTGGAAGATGTGAGAGATGATGATTTTGAGTCCAAATCAGGACCTGAAATCACCTTTGAGCCGCCTTGTGAGAGTGAGCATCAACAACGCGCCAAGAAGAGACGTTATAATCGCCATACACACCACCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCGCACCCAGATGACAAGCAAAGAATGGACCTTAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAGAACAAACGCACCCAAATGAAGGCTCAACAGGAAAGACATGAAAACGCCATTTTGAAAGCCGAGAATGAAAAGCTTCGAGCTGAGAATACTCGTTACAGAGAAGCATTCGCCCACTCCACCTGCTGCCCCAACTGTGGTTCCTCCGCCACTGCCCTCGGCGAGATGTCCTTCGACGACCAACATTTGCGCATTGAAAATTCTCGTTTGCGAGATGAGATGGAGCGAATGAGTGGATATGGCCTGAAATCCACCAAGTCTGTCCCTTCTTCGTACTATCACCTGCCGTCCAATGCTCCACAGTCGTCGGGTTTCGTGGGGGAAATGTATGGAGCGTGCGACTTTCTCCGCTCCATTTCCAGACCTTCAGAAGCCGACAAGCCAATCATTGTAGAACTGGCGGTTTCCGGCATGGAGGAATTGAGCCGAATGGCTCAGGCCGGAGAACCGTTGTGGGTTCCGGCTGATACCAAGTCAAGTGAAGTGGTTCTTAACGAAGCAGAGTATTTGAGCTGTTTTGGGGGCAGAGTTGGGCCCAAACCCTTGGGCTTTAGAACCGAAGCTTCTCGAGTTTCGGCTATTGTGTTCATGAACCATATTAAGCTCGTGGATATTTTAATGGACGCTACGCAATGGTCCACTGTGTTCTGCGGCATTGTTTCCCGGGCGTCCACCGTTGAAGTTCTTTCGCCTGGCCTACCCGGAAACTTCAACGGCGCCTTGTACCTGATGAGTGCTGAATTCCAAGTTCCATCGCCACTTGTTCCAACACGTGAAAACTACTTTGTAAGATACTGCAAACAGCAGGGGGATGGGGTATGGGCGGTGGCTGATGTTTCCTTGGACACCCTGCGGCCCTGTTCCATGCCAAGGACCCGAAGGAGACCTTCTGGTTGTTTGATTCAACAATTGCCCAATGGCTATTCAAAGATCACTTGGGTGGAACATGTTGAGGCGGACGAAACTGGTGTCCCGACAATGTACAGACCGCTCTTTAATTCAGGCCTCGCTTTTGGGGCTAAACGATGGGTTGCTACTTTAGATAGGCAATCTGAACGTTTTGCCACATCAATCGCCACCTCCATATCCACCGGCGATCTACGCGTCATATCGAGTATTGAAGGGAGGAAGAGTATGCTGAAGCTAGCCGAGAGAATGGTGACGAGCTTTTGCGCTGGCGTTGGCGCGTCGAGTGTACACGCGTGGACGGCGTTACCAATCGCCGCTGGTGATGATGTTCGAGTTGTAACGAGGAAGAGCACCGACGAACCAGGGCGACCACCTGGTGTTGTGCTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAGGTTGTGTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGGTTAGTCCAGGAAATGGCGCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTTTCCTTGCTCCGTGTCAATAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTGTACAGGATCCTACGTTATTTATGCTCCGGTGGACACAGTTGCAATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTTTACCGTCAGGATTCGCCATACTCCCTGACGGACCCGCCGGGGCCAACGGTGGGGAAATTCTGGAGCTGGGCTCCGTAGGTGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGTCGAGAAGTCAAGAACGCACCTTGAAAAGCACTTCCCCCTGCCCCGGCGGTGATTTAGAGACGAATGGTGAATGGTTTGTAGGGGTTTTGAGAAGCACCATGATCTCTTCACTTAGGCTCACATCTTCCAATCTCACTTCCTCTGAGTTTTTCAACAGAAAATCTCCAGTTCCATGGCCGAATCTTCCATTGCAATCCTCGGATTGCTGTGCTCTTAAGCATGTCGATCGATCTCTTTCTACCAACAAACCACTTCACATCTCATCCGTTGAGAATCTTTCTTTCCCCACAAAATCATCTCAGCGTTCGACGGTGTGCAAGGCGTATGAGGCTGAATCCCGACCTCTTCAGATTAACATTGAGCTTCCCGATGAACAGACGGCTCAGAAACTCAAAATTGGGCTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTATAACAAGAAGGTTCTTAATGCCTTCCCTTATCCATGGCTCACCTCCACTCTCTCCCTTGCGGCTGGATCGCTCATGATGCTTATTTCTTGGGCCACTAGAATGGTCGACGCTCCCAAAACCGATTTCGATTTCTGGAAATCCCTACTGCCGGTTGCAGTGGCGCATTCGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTCGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCAGCTTTCAGTGTGTTGGTGTCCAGGTTTCTATTGGGCGAGATGTTTCCATTGCCAGTTTACTTATCTCTTATCCCAATCATTGGAGGCTGCGCTCTTTCCGCCGTTACTGAGCTCAACTTCAACATGACCGGTTTCTCGGGAGCGATGATATCGAACTTGGCATTTGTGTTTAGAAACATATTCTCAAAGAAAGGGATGAAGGGAAAGTCAGTGAGTGGGATGAATTACTACGCTTGCCTCTCATTGCTGTCTCTGCTAATTCTTACTCCTTTCGCCATTGCTGTGGAGGGACCCAAGTTGTGGGCTGACGGATTCCAAAGTGCTCTCTCCCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTACCACTTGTACAACCAAGTGTCGTACATGTCTCTAGATCAGATATCGCCACTGACATTCAGCGTGGGTAACACAATGAAAAGAATCTTCGTAATAGTGTCGTCGATTATCATCTTCCACACTCCTGTCCGACCCATCAACGCCATTGGAGCTGCCATCGCAATCCTCGGAACCTTCATCTACTCTCAGGAGATCGTTGTTGACGCCGATTTTGTAGCCACAGGGAGAGGAGATTGTGGTTGTGTTGGTTGA 3390 49.56 MFDQDMFHALHPHHHMFDMAFNTSENELEDVRDDDFESKSGPEITFEPPCESEHQQRAKKRRYNRHTHHQIQEMEAFFKECPHPDDKQRMDLSRELGLEPLQVKFWFQNKRTQMKAQQERHENAILKAENEKLRAENTRYREAFAHSTCCPNCGSSATALGEMSFDDQHLRIENSRLRDEMERMSGYGLKSTKSVPSSYYHLPSNAPQSSGFVGEMYGACDFLRSISRPSEADKPIIVELAVSGMEELSRMAQAGEPLWVPADTKSSEVVLNEAEYLSCFGGRVGPKPLGFRTEASRVSAIVFMNHIKLVDILMDATQWSTVFCGIVSRASTVEVLSPGLPGNFNGALYLMSAEFQVPSPLVPTRENYFVRYCKQQGDGVWAVADVSLDTLRPCSMPRTRRRPSGCLIQQLPNGYSKITWVEHVEADETGVPTMYRPLFNSGLAFGAKRWVATLDRQSERFATSIATSISTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPIAAGDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDCTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPAGANGGEILELGSVGEEEEEEEEEEEEEEESRSQERTLKSTSPCPGGDLETNGEWFVGVLRSTMISSLRLTSSNLTSSEFFNRKSPVPWPNLPLQSSDCCALKHVDRSLSTNKPLHISSVENLSFPTKSSQRSTVCKAYEAESRPLQINIELPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRMVDAPKTDFDFWKSLLPVAVAHSIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAVTELNFNMTGFSGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWADGFQSALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPVRPINAIGAAIAILGTFIYSQEIVVDADFVATGRGDCGCVG 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5496170 5504342 + CmoCh03G005500.1 Cmo03g00550 378013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00550 1129 SUPERFAMILY Bet v1-like 482 658 - -
Cmo03g00550 1129 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 819 1109 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cmo03g00550 1129 Gene3D - 48 133 - -
Cmo03g00550 1129 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 667 IPR042160 -
Cmo03g00550 1129 Coils Coil 109 143 - -
Cmo03g00550 1129 SMART START_1 239 460 IPR002913 GO:0008289
Cmo03g00550 1129 MobiDBLite consensus disorder prediction 671 689 - -
Cmo03g00550 1129 SUPERFAMILY Bet v1-like 232 461 - -
Cmo03g00550 1129 SUPERFAMILY Multidrug resistance efflux transporter EmrE 861 954 - -
Cmo03g00550 1129 SUPERFAMILY Homeodomain-like 47 118 IPR009057 -
Cmo03g00550 1129 CDD START_ArGLABRA2_like 234 459 - -
Cmo03g00550 1129 Coils Coil 672 695 - -
Cmo03g00550 1129 MobiDBLite consensus disorder prediction 671 708 - -
Cmo03g00550 1129 CDD homeodomain 60 118 IPR001356 GO:0003677
Cmo03g00550 1129 Pfam Triose-phosphate Transporter family 819 1108 IPR004853 -
Cmo03g00550 1129 Pfam START domain 241 460 IPR002913 GO:0008289
Cmo03g00550 1129 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 24 667 - -
Cmo03g00550 1129 SMART HOX_1 59 121 IPR001356 GO:0003677
Cmo03g00550 1129 MobiDBLite consensus disorder prediction 28 63 - -
Cmo03g00550 1129 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Cmo03g00550 1129 ProSiteProfiles START domain profile. 230 463 IPR002913 GO:0008289
Cmo03g00550 1129 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Cmo03g00550 1129 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00550 Cmo07g00292 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01764 Cmo-Chr2:10084962 Cmo03g00550 Cmo-Chr3:5496170 1.38E-26 dispersed
Cmo03g00550 Cmo-Chr3:5496170 Cmo20g00616 Cmo-Chr20:3019339 0 dispersed
Cmo16g00906 Cmo-Chr16:5410802 Cmo03g00550 Cmo-Chr3:5496170 5.60E-169 dispersed
Cmo18g01131 Cmo-Chr18:11626770 Cmo03g00550 Cmo-Chr3:5496170 1.69E-65 dispersed
Cmo07g00292 Cmo-Chr7:1429581 Cmo03g00550 Cmo-Chr3:5496170 0 transposed
Cmo01g01194 Cmo-Chr1:9681913 Cmo03g00550 Cmo-Chr3:5496170 3.08E-173 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo13g00750 Cmo-Chr13:7339496 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo02g00167 Cmo-Chr2:799348 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo03g00550 Cmo-Chr3:5496170 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
Cmo03g00550 Cmo-Chr3:5496170 Cmo09g00935 Cmo-Chr9:4905641 1.24E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9391 PF03151 TPT 3.40E-113 CL0184 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00550 K09338 - csv:101209093 1132.47