Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00560 ATGGCTTGCTCAAACTTTACAATGTGGGTATCCTCAAAATCGTCTTCATCCGATGACTCCGCTCTATCCTTTCGGCATTTTAACCCACTTCAAGTTCCTTTGCAAGGCTCTGCCTCGCGATCCTCATCTGTCACTCCGATTCATTGTGGCCTCCGTGAGCTTCGAGAACGGATCGATTCAGTGAAGAACACCCAGAAAATTACTGAGGCTATGAAGCTCGTTGCTGCTGCCAAAGTGCGTAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCATTCTCGGAATCTCTAGTTGAAGTTCTTTACAACATCAACGAGCAGCTCCAAACCGAAGATATAGATGTTCCTCTTACAAACGTCCGACCGGTTAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGTGGCCTCTGCGGAAGTTTCAATAACATGATCATCAAAAAGGCAGAGTCCAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACGGTTATTAGCGTTGGCAAGAAGGGAAATTCGTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCCACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTGTTAGCGAAGAGGTAGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCGGACCCTGTGATCCACACACTGCTTCCATTGTCCCCGAAAGGAGACATTTGTGATATAAATGGTGTTTGTGTCGATGCCGCAGAGGACGAGTTCTTCAGATTGACGACAAAGGAAGGAAAATTAACCGTAGAGAGAGATGCCGTGAGAACAAAAACCTCGGATTTTTCCCCAATTTTGCAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGGTCATTGCAAGAATCATTAGGCAGTGAACTTGCGGCCAGAATGAGTGCCATGAGCAGTGCTACTGATAATGCAAGCGAGTCGAAGAAGACGCTCTCTATTGTCTACAACAGACAGCGTCAAGCCAAAATCACTGGCGAGATTTTGGAGATTGTTGCTGATCCTTGGTGGCCAAAACTTGTGTCACATATCTCAATGCAGCAGCAAGGCAGAAGCAAATTAAGTGCTTTTACTCCTCTGGCACCTCCTTCAAGGCCAGCTTCAGAGATTGAAAAAAGCAATGGAAATAGATTACTGAGATCAACCAGTATGGCAGGTTCCAACACCAGATGGAGCCATGGGTTTCATGGAAAATCAATCAAAGACGAAGACTTTGATGAAGAACAAGCGTGGGGCTTTCCCAGCGAAACCAAAACAGAAGAAGCTTCTACCCCTGTGGCAACAAAATTCAAGCACTTCAATTCATCACCCTCTTCTTCTTCTAACTCCTCTGCTTGGTGCATGCAGATCAGCTCTGCTCCAAAAATGATCCCAAAAGCCAAAACCACACCCAATCAAGAACCCAAAACTGTGAAGAGATCCTCAGCTCCTCTGGAGATACCAGACTGGTCCAAGATATATGGAAGGAATGGCAACATGGGTAGTCCATGGATGGACGAGGGATACGGCTTTATTAACGATGATGAGGAGGAAGAGGAGGAGGAGGATGTTATGGTTCCTCCACATGAATGGATTGCTAGGAAGCTTGCAAGGACCCAAATTTCATCCTTCTCAGTTTGTGAAGGCATTGGAAGAACATTGAAGGGAAGAGATCTAAGTAAAGTGAGGAATGCCATATTGACCAAAACTGGCTTTTTGGAGTAA 1800 44.89 MACSNFTMWVSSKSSSSDDSALSFRHFNPLQVPLQGSASRSSSVTPIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTNVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGDICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLGSELAARMSAMSSATDNASESKKTLSIVYNRQRQAKITGEILEIVADPWWPKLVSHISMQQQGRSKLSAFTPLAPPSRPASEIEKSNGNRLLRSTSMAGSNTRWSHGFHGKSIKDEDFDEEQAWGFPSETKTEEASTPVATKFKHFNSSPSSSSNSSAWCMQISSAPKMIPKAKTTPNQEPKTVKRSSAPLEIPDWSKIYGRNGNMGSPWMDEGYGFINDDEEEEEEEDVMVPPHEWIARKLARTQISSFSVCEGIGRTLKGRDLSKVRNAILTKTGFLE 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5539010 5543784 + CmoCh03G005600.1 Cmo03g00560 378023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00560 599 CDD F1-ATPase_gamma 51 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 50 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 365 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 Pfam ATP synthase 51 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 Pfam Senescence regulator 436 599 IPR007608 -
Cmo03g00560 599 Coils Coil 51 71 - -
Cmo03g00560 599 PANTHER ATP SYNTHASE GAMMA CHAIN 1 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 Gene3D ATP synthase, gamma subunit, helix hairpin domain 269 366 - -
Cmo03g00560 599 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 115 - -
Cmo03g00560 599 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo03g00560 599 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 365 - -
Cmo03g00560 599 Gene3D - 116 241 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00560 Cmo13g00771 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00560 Cmo-Chr3:5539010 Cmo16g00898 Cmo-Chr16:5274939 1.24E-129 dispersed
Cmo03g00558 Cmo-Chr3:5531309 Cmo03g00560 Cmo-Chr3:5539010 5.55E-11 proximal
Cmo01g01177 Cmo-Chr1:9589343 Cmo03g00560 Cmo-Chr3:5539010 8.81E-21 wgd
Cmo13g00771 Cmo-Chr13:7446276 Cmo03g00560 Cmo-Chr3:5539010 0 wgd
Cmo18g00273 Cmo-Chr18:1797316 Cmo03g00560 Cmo-Chr3:5539010 1.29E-10 wgd
Cmo03g00560 Cmo-Chr3:5539010 Cmo09g00954 Cmo-Chr9:5023313 3.62E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00560 K02115 - csv:101218747 650.588