Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00573 ATGGACAAAGGATGGGGTCTAACCATGCGTGATTCTGATCAGTCAATTGGGTTCCTTTCACACAACCCATCGCCGCTTACTCTCAATTCCTTTCATACAATGTTTCGTGCTACAGATTTTCCGGTGAAACTTTCCCGGACTGACGACAACGATGCGCCTCCACCGCCGCCCGACGACAATCGCTTCGTCGTCAACGAGGTCGACTTTTTCTCCGATAACAAAAGGGTGGTTGATTATCGGGAGGATCAAGACGCAAAACCTTCCGCTGATATTCTCGCCACCGCCCTTGTCAATAAAAACGACAACGTTTCCACTGCTACCGGAACTGCCTTTGTCAATACTGGGTTGCATTTGTTAACTGCTAACACCGGAAGCGATCAATCCTCGACGGTGGATGATGGAATTTCATCGGATGGTGATGATAAACGAGCCAAAAACGAGTTAGCGCAGCTTCAAATGGAGCTCCAGCGTATGAAAGCTGAGAATCACAAGCTTAGGGACATGCTAAGCCATGTGAGCAACAGCTACAGTACCCTACAAATGCATTTCTTTACCTTATTGCAACAGAATCAGGCCTCCCAACCCGGTCATGAAGCAGAGATTGGGGAGAAGAAATCGAGGGAATTAAAACAAGAAGTGGGAAGGGCGGTGGTTCCGAGGCAATTTATGGATCTAGGACCAAGTGGGAACACAGCTGAAATGGATGAATTATCTAATTCATCATCGGATGAAAGAACTCGTTCTGGGTCTCCGTTGAACAACAACAACAACAACAACTCGGAATCCGCCTCCAAAAAGAGCAGTGCAAGAGATCATCTCGAAATCGCCGCCCCTTCCGACCAGGGGAATTCCAATTTCAGAGATGCCAAACGATCCATCCCCAGAGAAGAAAGCTCGGAATCAGAGTCCCACGGTTGGGGGCCTAATAAAGCCCCCCGATTCAACTCTTCTACTAAACCCCTCGAGCAATCCACCGAAGCCACCATGAGAAAAGCCCGCGTCTCAGTCCGTGCTCGATCAGAAGCTCCTATGATTTCTGATGGGTGTCAATGGCGAAAATATGGGCAAAAAATGGCTAAAGGAAACCCATGTCCACGGGCTTATTATCGGTGCACAATGGCTGTGGGTTGCCCTGTTCGCAAACAAGTGCAACGTTGTGCGGAAGACAGGACTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCTCCCGCGGCGATGGCGATGGCGTCAACCACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCCAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCCTCGGCTCCATTTCCAACCATCACGTTAGACCTCACTCAGACCCCAAACCCATTGCAATTCCAAAGACCCCCGGCAGCACCCTTCCACCTGCCATTCCCCGGCGGACAACCACCGTTAGCCGCCGCCCAAGTTTTGGGGCAACCGTTGTACAATCAGTCAAAATTCTCAGGGCTACAGCTATCTCATGAGATGGGGGCTAATTCCCCTCATTTGGGTCACCCCCAAATTGCACAACCGGCGCCCACAACCCAGTCTGGTGGTGCTTCTTTTGCCGATACGTTGAGTGCCGCCACCGCCGCTATCACCGCTGATCCGAATTTCACCGCCGCTCTCGCAGCCGCTATCTCCTCCATCATCGGCGGAGCACATTCGAATAATAATAGCACCACCACCACCAATACCACAACAAACAACAACAACAACGGAGACAACAACAGCAAAATTAGCAGTTTCCCTGGAAATTAA 1836 50.0 MDKGWGLTMRDSDQSIGFLSHNPSPLTLNSFHTMFRATDFPVKLSRTDDNDAPPPPPDDNRFVVNEVDFFSDNKRVVDYREDQDAKPSADILATALVNKNDNVSTATGTAFVNTGLHLLTANTGSDQSSTVDDGISSDGDDKRAKNELAQLQMELQRMKAENHKLRDMLSHVSNSYSTLQMHFFTLLQQNQASQPGHEAEIGEKKSRELKQEVGRAVVPRQFMDLGPSGNTAEMDELSNSSSDERTRSGSPLNNNNNNNSESASKKSSARDHLEIAAPSDQGNSNFRDAKRSIPREESSESESHGWGPNKAPRFNSSTKPLEQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTQTPNPLQFQRPPAAPFHLPFPGGQPPLAAAQVLGQPLYNQSKFSGLQLSHEMGANSPHLGHPQIAQPAPTTQSGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSTTTTNTTTNNNNNGDNNSKISSFPGN 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5582475 5585030 - CmoCh03G005730.1 Cmo03g00573 378036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00573 611 Coils Coil 141 168 - -
Cmo03g00573 611 MobiDBLite consensus disorder prediction 214 339 - -
Cmo03g00573 611 Pfam WRKY DNA -binding domain 347 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g00573 611 Gene3D WRKY domain 330 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g00573 611 MobiDBLite consensus disorder prediction 232 264 - -
Cmo03g00573 611 MobiDBLite consensus disorder prediction 519 546 - -
Cmo03g00573 611 SUPERFAMILY WRKY DNA-binding domain 338 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g00573 611 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 60 597 - -
Cmo03g00573 611 MobiDBLite consensus disorder prediction 310 330 - -
Cmo03g00573 611 MobiDBLite consensus disorder prediction 289 303 - -
Cmo03g00573 611 SMART WRKY_cls 345 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g00573 611 ProSiteProfiles WRKY domain profile. 340 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g00573 611 MobiDBLite consensus disorder prediction 578 611 - -
Cmo03g00573 611 CDD bZIP 142 170 - -
Cmo03g00573 611 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 597 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00573 Cmo07g00311 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00573 Cmo-Chr3:5582475 Cmo10g00198 Cmo-Chr10:885235 3.12E-50 dispersed
Cmo11g01889 Cmo-Chr11:13133736 Cmo03g00573 Cmo-Chr3:5582475 2.43E-138 wgd
Cmo19g00938 Cmo-Chr19:8631530 Cmo03g00573 Cmo-Chr3:5582475 4.05E-122 wgd
Cmo03g00573 Cmo-Chr3:5582475 Cmo07g00311 Cmo-Chr7:1500016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9392 PF03106 WRKY 5.40E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00573 - - mcha:111012275 807.364