Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00574 | ATGGCTTCCCCATTATTATCCCTCTTCTTCCTCGCCACAATTATCCGCCTCCCTTCACCGTCCACCGCCTACTCCAACAGCTACACCAAACTAGCCCTCAATCCCGTTGACGCATGCTGGAGGACCAAGCCCAACTGGGCGGCCAACCGCCGCGCCCTCGCAGACTGCGCCGTCGGGTTTGGCAGTGACGCATTGGGAGGCAAATTCGGGTCAATCTACGTGGTCATAGACCCGTCGGACGACCCGGAATACCCGAAGCCCGGAACGCTGCGTTTTGGGGTGATCCAAGAGGAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACTCTGGAAAGGGAACTGATGGTGAACAGCTTCAAGACCATTGACGGGCGAGGGGCTAAAGTGGAAATTGGCAATGGGCCATGCATTACCATCCAAAACGTGAGCCATGTCATAATCCACGGCATCACCATCCGTGACTGTAAGCCGGCCAAGCCTGGGCGCGTGAGGAGCTCAGTCACCCATTGTGGAGACCGCCAACAGTCCGATGGTGACGCCATTTCTGTATTCAGTTCTTCCCATATTTGGATCGACCATTGCTCCTTGGCTAGCTGCACTGACGGCCTCATTGACGTCATCCACGCTTCCACTGCCGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTGATCCTTCTCGGACACAACGATGAATTTACAGCTGATCGAATTATGAGAGTGACCGTAGCCTTCAATCGTTTTGGCGACGGACTTGTTCAAAGAATGCCAAGGGTGAGATTTGGGTATGCCCATGTGGCCAATAATTGGTACCATAAGTGGGAAATGTACGCTGTGGGTGGCAGTGCAGATCCAAAAATCTTCAGCCAAGGAAACTACTTTGATGCTCCTGATGATTCATCCTCAAAGCAGGTTACAAAGAGAGAGGTTTATGTGAATGGATGGAAGAAGTGGAAATGGAGGTCTTCAAATGATGTGTTTGTGAATGGGGCTTATTTCATCCCATCTGGGTGGGGGTCTTGTACGCCTATCTACACTCGAGATCAAGCTTTTCCTGTGGCTCATGGCTCTTTGGCTCCTCTTTTGACTGATAGCGCTGGTGCTTTGAGTTGTGTTGTTGGTAAAGCTTGTTGA | 1146 | 50.61 | MASPLLSLFFLATIIRLPSPSTAYSNSYTKLALNPVDACWRTKPNWAANRRALADCAVGFGSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQEEPLWIVFARDMVITLERELMVNSFKTIDGRGAKVEIGNGPCITIQNVSHVIIHGITIRDCKPAKPGRVRSSVTHCGDRQQSDGDAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTADRIMRVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYHKWEMYAVGGSADPKIFSQGNYFDAPDDSSSKQVTKREVYVNGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPIYTRDQAFPVAHGSLAPLLTDSAGALSCVVGKAC | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5590040 | 5591525 | - | CmoCh03G005740.1 | Cmo03g00574 | 378037 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00574 | 381 | Gene3D | - | 33 | 374 | IPR012334 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 56 | 73 | IPR018082 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 79 | 104 | IPR018082 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 115 | 131 | IPR018082 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 179 | 200 | IPR018082 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 259 | 278 | IPR018082 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 281 | 300 | IPR018082 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 322 | 346 | IPR018082 | - | |
Cmo03g00574 | 381 | PRINTS | Pollen allergen Amb family signature | 352 | 375 | IPR018082 | - | |
Cmo03g00574 | 381 | PANTHER | PECTATE LYASE | 21 | 380 | - | - | |
Cmo03g00574 | 381 | Pfam | Pectate lyase | 116 | 298 | IPR002022 | - | |
Cmo03g00574 | 381 | PANTHER | PECTATE LYASE 18-RELATED | 21 | 380 | IPR045032 | GO:0030570 | |
Cmo03g00574 | 381 | SMART | amb_all | 107 | 304 | IPR002022 | - | |
Cmo03g00574 | 381 | SUPERFAMILY | Pectin lyase-like | 34 | 372 | IPR011050 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00574 | Cmo13g00788 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00463 | Cmo-Chr3:5114304 | Cmo03g00574 | Cmo-Chr3:5590040 | 2.67E-53 | dispersed | |
Cmo03g00574 | Cmo-Chr3:5590040 | Cmo13g00799 | Cmo-Chr13:7568287 | 1.90E-146 | dispersed | |
Cmo07g01008 | Cmo-Chr7:4979338 | Cmo03g00574 | Cmo-Chr3:5590040 | 2.67E-52 | dispersed | |
Cmo13g00788 | Cmo-Chr13:7521413 | Cmo03g00574 | Cmo-Chr3:5590040 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00574 | K01728 | - | csv:101210816 | 671.389 |