Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00574 ATGGCTTCCCCATTATTATCCCTCTTCTTCCTCGCCACAATTATCCGCCTCCCTTCACCGTCCACCGCCTACTCCAACAGCTACACCAAACTAGCCCTCAATCCCGTTGACGCATGCTGGAGGACCAAGCCCAACTGGGCGGCCAACCGCCGCGCCCTCGCAGACTGCGCCGTCGGGTTTGGCAGTGACGCATTGGGAGGCAAATTCGGGTCAATCTACGTGGTCATAGACCCGTCGGACGACCCGGAATACCCGAAGCCCGGAACGCTGCGTTTTGGGGTGATCCAAGAGGAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACTCTGGAAAGGGAACTGATGGTGAACAGCTTCAAGACCATTGACGGGCGAGGGGCTAAAGTGGAAATTGGCAATGGGCCATGCATTACCATCCAAAACGTGAGCCATGTCATAATCCACGGCATCACCATCCGTGACTGTAAGCCGGCCAAGCCTGGGCGCGTGAGGAGCTCAGTCACCCATTGTGGAGACCGCCAACAGTCCGATGGTGACGCCATTTCTGTATTCAGTTCTTCCCATATTTGGATCGACCATTGCTCCTTGGCTAGCTGCACTGACGGCCTCATTGACGTCATCCACGCTTCCACTGCCGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTGATCCTTCTCGGACACAACGATGAATTTACAGCTGATCGAATTATGAGAGTGACCGTAGCCTTCAATCGTTTTGGCGACGGACTTGTTCAAAGAATGCCAAGGGTGAGATTTGGGTATGCCCATGTGGCCAATAATTGGTACCATAAGTGGGAAATGTACGCTGTGGGTGGCAGTGCAGATCCAAAAATCTTCAGCCAAGGAAACTACTTTGATGCTCCTGATGATTCATCCTCAAAGCAGGTTACAAAGAGAGAGGTTTATGTGAATGGATGGAAGAAGTGGAAATGGAGGTCTTCAAATGATGTGTTTGTGAATGGGGCTTATTTCATCCCATCTGGGTGGGGGTCTTGTACGCCTATCTACACTCGAGATCAAGCTTTTCCTGTGGCTCATGGCTCTTTGGCTCCTCTTTTGACTGATAGCGCTGGTGCTTTGAGTTGTGTTGTTGGTAAAGCTTGTTGA 1146 50.61 MASPLLSLFFLATIIRLPSPSTAYSNSYTKLALNPVDACWRTKPNWAANRRALADCAVGFGSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQEEPLWIVFARDMVITLERELMVNSFKTIDGRGAKVEIGNGPCITIQNVSHVIIHGITIRDCKPAKPGRVRSSVTHCGDRQQSDGDAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTADRIMRVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYHKWEMYAVGGSADPKIFSQGNYFDAPDDSSSKQVTKREVYVNGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPIYTRDQAFPVAHGSLAPLLTDSAGALSCVVGKAC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5590040 5591525 - CmoCh03G005740.1 Cmo03g00574 378037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00574 381 Gene3D - 33 374 IPR012334 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cmo03g00574 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cmo03g00574 381 PANTHER PECTATE LYASE 21 380 - -
Cmo03g00574 381 Pfam Pectate lyase 116 298 IPR002022 -
Cmo03g00574 381 PANTHER PECTATE LYASE 18-RELATED 21 380 IPR045032 GO:0030570
Cmo03g00574 381 SMART amb_all 107 304 IPR002022 -
Cmo03g00574 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00574 Cmo13g00788 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00463 Cmo-Chr3:5114304 Cmo03g00574 Cmo-Chr3:5590040 2.67E-53 dispersed
Cmo03g00574 Cmo-Chr3:5590040 Cmo13g00799 Cmo-Chr13:7568287 1.90E-146 dispersed
Cmo07g01008 Cmo-Chr7:4979338 Cmo03g00574 Cmo-Chr3:5590040 2.67E-52 dispersed
Cmo13g00788 Cmo-Chr13:7521413 Cmo03g00574 Cmo-Chr3:5590040 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00574 K01728 - csv:101210816 671.389