Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00580 ATGGATGGTCCAAGTGGGAGTTCTTCAGGAGGAGGTATGATGAATTTTGTTGATCAAAATAGTCATAATGGGTTTGGTTCCATGATGATGATGATGCCTTTGATGTCCACCTCTCATCAACAACAACACCACCAGGGAGATGCATGTAGCTCGTTTCTTCCTCCTCCTCCTCCGCCGCCGCCGCCTAATTACACCAACAATAACACTTCTAATTCAATTTCTTACTTCTTGGATGAAACCAACAACAACATCAACGAGGGTAGTAATGGTAATTCTTCATGTGAATTGAAGGCCAAAATCATGGGTCATCCCCACTACCACCGCTTGCTTGTTGCCTATGTCAATTGCCGGAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTGGAACAAGCGTGTGCATCTGCAGCCACAATGAGTGGTACGTCTTGTATTGGACAAGATCCGGGGCTTGATCAGTTCATGGAGGCTTACTGTGAGATGCTCACCAAATATGAACAAGAACTTTCTAAACCCTTTAGGGATGCCATGCTTTTTCTTCAACGAATTGAGTGCCAATTCAAAGCTCTCTCTATCTCCTCCTCCTCCGATGCTGGTTGCGGTGAGGCATTTGATAGGAACGGATCATCTGAAGAGGAAGTTGATATGAATAGGCAGTCAATTGACCCCTGGGCGGAAGACCATGAACTGAAAGGTCAACTCCTCCGAAAATACAGCAGATACTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCAAAGGAGGCCAGGCAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAATCACAGAAGGTAGCTTTAGCTGAATCAACTGGGTTAGATCAAAAGCAAATCAACAACTGGTTCATCAACCAGAGAAAAAGACACTGGAAACCATCTGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCATCATCCACAGTATTACATGGACTCCGTCTTGGGGAATCCTTTCCCATTTGATATCTCTCCCACTCTTCTCTAA 1050 45.9 MDGPSGSSSGGGMMNFVDQNSHNGFGSMMMMMPLMSTSHQQQHHQGDACSSFLPPPPPPPPPNYTNNNTSNSISYFLDETNNNINEGSNGNSSCELKAKIMGHPHYHRLLVAYVNCRKVGAPPEVVARLEQACASAATMSGTSCIGQDPGLDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIECQFKALSISSSSDAGCGEAFDRNGSSEEEVDMNRQSIDPWAEDHELKGQLLRKYSRYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHHHPQYYMDSVLGNPFPFDISPTLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5622973 5626364 - CmoCh03G005800.1 Cmo03g00580 378043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00580 349 Gene3D - 254 316 - -
Cmo03g00580 349 SMART KNOX2_2 141 192 IPR005541 GO:0003677|GO:0005634
Cmo03g00580 349 Pfam KNOX2 domain 144 190 IPR005541 GO:0003677|GO:0005634
Cmo03g00580 349 ProSiteProfiles 'Homeobox' domain profile. 249 312 IPR001356 GO:0003677
Cmo03g00580 349 ProSitePatterns 'Homeobox' domain signature. 287 310 IPR017970 GO:0000981|GO:0006355
Cmo03g00580 349 PANTHER - 3 338 - -
Cmo03g00580 349 Pfam ELK domain 229 250 IPR005539 GO:0003677
Cmo03g00580 349 SMART ELK_2 229 250 IPR005539 GO:0003677
Cmo03g00580 349 ProSiteProfiles ELK domain profile. 229 249 IPR005539 GO:0003677
Cmo03g00580 349 CDD homeodomain 261 313 IPR001356 GO:0003677
Cmo03g00580 349 MobiDBLite consensus disorder prediction 51 65 - -
Cmo03g00580 349 Pfam KNOX1 domain 96 134 IPR005540 GO:0003677|GO:0005634
Cmo03g00580 349 MobiDBLite consensus disorder prediction 37 68 - -
Cmo03g00580 349 SUPERFAMILY Homeodomain-like 251 326 IPR009057 -
Cmo03g00580 349 SMART KNOX1_2 94 138 IPR005540 GO:0003677|GO:0005634
Cmo03g00580 349 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 338 - -
Cmo03g00580 349 Pfam Homeobox KN domain 269 308 IPR008422 GO:0003677|GO:0006355
Cmo03g00580 349 SMART HOX_1 251 316 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00580 Cmo-Chr3:5622973 Cmo09g00320 Cmo-Chr9:1391789 8.53E-84 dispersed
Cmo11g01880 Cmo-Chr11:13095540 Cmo03g00580 Cmo-Chr3:5622973 6.56E-123 wgd
Cmo03g00580 Cmo-Chr3:5622973 Cmo07g00320 Cmo-Chr7:1518538 7.87E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9393 PF03791 KNOX2 1.90E-20 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00580 - - cmax:111497440 509.605