Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00591 ATGGCAACCTCATGTTTTGGTTCACTTTGGATTCGAAAATCAAAGAGCAAACCCTTATCAACACCTTCCTCATTGAAATCCCAGAAGAATTCCGAAATGGAAAATATGGAAAGAAGAAGATTTGATAGCTTGGAATCATGGTCGATGATCTTAGAGTCCGACAATGTCGAAACTTGGGAGACATCGAAAGAGGATCAGGAAGAATGGACCGCTGATCTATCTCAACTCTTCATCGGTAACAAATTCGCCTCCGGTGCTCACAGTCGAATATACCGTGGAATTTACAAACAGAGAGCCGTCGCTGTTAAGATGGTTAGAATCCCAAACCAAAACGAGGAAACCAGAGCCAAACTCGAGCAACAATTCAAGTCAGAAGTCGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTAAATTCATGGTGGGTTCCTCTTCAGTTCATTGCAGCCAGTAAAAAGCCGCCGGTATACTGCATAATTACAGAGTATATGTCACAAGGTACTCTGAGGATGTATTTAAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATTCTAAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTTCATTCCCAAGGAGTAATCCACAGAGACTTGAAATCAAACAACTTGCTCTTAAACGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACCTCCTGCCTCGAAACACAGTGCCGTGAATCGAAAGGAAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCATATACACGCAAAGTTGATGTTTACAGCTTTGGGATTGTGCTGTGGGAGCTCACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCTGTTCAGGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCGTTACCGGCGAGTTGTCAGCCGGCGCTAGCCCACCTGATAAAACGATGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGTGACATTGTGGTGGCTTTGGAGAAATACGACGAGTGTGTGAAAGAGGGTCTTCCGCTTGCACATCATAGAAGATTGGTAAACCGAAACGCCATTATTGAACGCTTCAAAGCTTGTACCTCAACCGCGTCTTCAATACCTGTACATGCCTGA 1149 45.69 MATSCFGSLWIRKSKSKPLSTPSSLKSQKNSEMENMERRRFDSLESWSMILESDNVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEETRAKLEQQFKSEVALLSRLFHPNIVQLNSWWVPLQFIAASKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERFKACTSTASSIPVHA 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5670918 5672614 + CmoCh03G005910.1 Cmo03g00591 378054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00591 382 SUPERFAMILY Protein kinase-like (PK-like) 50 336 IPR011009 -
Cmo03g00591 382 MobiDBLite consensus disorder prediction 15 35 - -
Cmo03g00591 382 Gene3D Phosphorylase Kinase; domain 1 65 167 - -
Cmo03g00591 382 MobiDBLite consensus disorder prediction 15 30 - -
Cmo03g00591 382 Gene3D Transferase(Phosphotransferase) domain 1 168 363 - -
Cmo03g00591 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Cmo03g00591 382 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 370 - -
Cmo03g00591 382 Pfam Protein tyrosine and serine/threonine kinase 78 338 IPR001245 GO:0004672|GO:0006468
Cmo03g00591 382 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 370 - -
Cmo03g00591 382 ProSiteProfiles Protein kinase domain profile. 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00591 382 PRINTS Tyrosine kinase catalytic domain signature 310 332 IPR001245 GO:0004672|GO:0006468
Cmo03g00591 382 PRINTS Tyrosine kinase catalytic domain signature 163 176 IPR001245 GO:0004672|GO:0006468
Cmo03g00591 382 PRINTS Tyrosine kinase catalytic domain signature 266 288 IPR001245 GO:0004672|GO:0006468
Cmo03g00591 382 PRINTS Tyrosine kinase catalytic domain signature 247 257 IPR001245 GO:0004672|GO:0006468
Cmo03g00591 382 PRINTS Tyrosine kinase catalytic domain signature 201 219 IPR001245 GO:0004672|GO:0006468
Cmo03g00591 382 SMART serkin_6 76 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00591 382 CDD STKc_MAP3K-like 83 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00591 Cmo-Chr3:5670918 Cmo13g00921 Cmo-Chr13:8137683 7.89E-137 dispersed
Cmo17g01175 Cmo-Chr17:9450541 Cmo03g00591 Cmo-Chr3:5670918 1.07E-58 dispersed
Cmo03g00591 Cmo-Chr3:5670918 Cmo07g00331 Cmo-Chr7:1551809 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74187 PF07714 PK_Tyr_Ser-Thr 6.60E-64 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00591 - - cmo:103484647 710.679