Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00608 ATGCGAGCATCTCAGAATAGCCAGGCATCGTCTGGGATCCATGAGATGCATCACCAGTCTGTGCAAAAGATAGATCCCTACTATTTATCACATTTACACATATTGGAAAACAATGTTTCTCCTGACGCAAGCAGCCAGGGAAACAGTGTTAACTTTTCTTCCTTTAAGGATCAGTTCTTTACTCTGGAATCATTTCCGGCTACTGCTGATCTGAGTGCCTGTAATTCCCCTTCTGCTGTAAGTGGTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGTTCTCAATCATGCTCCTCAGATCAACCCCATTCCTTTGACAACACATGCGGATCACCACAAAGTGGATGCTCAGTGACTGATGATGATAACGAATTAAAGTACAAGCTGAAAGAATTAGAAATTTCTTTGCTGGGGCCTGAATCTGATATTTTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGCACATCAAGATGCTTCAGTAGCAAGGTGGAACTGGAATCAAGTGGCCGAGATGATTCCTGGACTTAACCTTCGGGATACGCTCATCCATTGTGCCCAAGCAATTCATGATTCTGATCTAAATGTGGCAACCTTATTTATGGATGTTTTAGGGAAGATGGTTTCTGTCTCTGGTGATCCAGCCCAGAGGTTGGGCGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAACGATCTGGGAGTGCAATATACAAGGCCCTAAAATGCGAAGAACCAACAAGCTCTGAACTCATGTCCTACATGTCTGTTCTATTCCAAATCTGCCCGTACTTTAAATTTGCTTACACCTCTGCCAATGCTATCATTTGGGAGGCCATGGTAAATGAACCGATAATCCACATAATTGATTTCCAAATCGCACAGGGTAGTCAGTATATACCTCTCATCCATGATCTTGCCAATCGGCCTGGTGGCCCTCCAGTTCTTCTACGCATCACAGGTGTGGATGATTCCCAATCATCTCATGCACGAGGAGGGGGACTTCAAATTGTGGGACAGAAGCTAGCTCAGCTGGCTCAATCAAAAGGAATTCCCTTCCAATTTCATGCTGCTGCAATGTCCGGTTGTGAGGTTGAACGTAGTAATCTTAGAATACGTCCTGGAGAAGCGTTGGCCGTAAATTTTCCATACGTCTTGCACCACATGCCAGATGAGAGTGTGAGCACACAGAATCACCGAGATCGGCTTCTAAGGCTAGTCAAAAGCCTGTCACCGAAAGTAGTAACTATTGTTGAGCAGGAATCTAACACCAACACATCCCCCTTCCTTATTCGTTTTCTAGAGACGCTGGATTATTATACTGCTATGTTTGAATCAATAGATGTAGCTCGTTCGAGAGACGACAAGCAGCGAATCAGAGCGGAGCAGCATTGCGTGGCCCGAGACATAGTGAACATGGTAGCTTGTGAGGGGTTTGAAAGGATAGAACGTCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAAGATGGCTGGTTTCACTTCATATCCACTGAGCTCCTCTGTAAGTGGAGCCGTCAAGAATTTGTTGAGGGATTTTAATGGGAACTATAGACTCCAAGAAGTGGATGGGTCTCTCTACCTTGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGATGA 1650 45.64 MRASQNSQASSGIHEMHHQSVQKIDPYYLSHLHILENNVSPDASSQGNSVNFSSFKDQFFTLESFPATADLSACNSPSAVSGLSSRSPFSPQGSQSCSSDQPHSFDNTCGSPQSGCSVTDDDNELKYKLKELEISLLGPESDILDSCYCSFRGGAHQDASVARWNWNQVAEMIPGLNLRDTLIHCAQAIHDSDLNVATLFMDVLGKMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPTSSELMSYMSVLFQICPYFKFAYTSANAIIWEAMVNEPIIHIIDFQIAQGSQYIPLIHDLANRPGGPPVLLRITGVDDSQSSHARGGGLQIVGQKLAQLAQSKGIPFQFHAAAMSGCEVERSNLRIRPGEALAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLIRFLETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERIERHELLGKWRMRMKMAGFTSYPLSSSVSGAVKNLLRDFNGNYRLQEVDGSLYLGWKNRAMATSSAWR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5732226 5733875 - CmoCh03G006080.1 Cmo03g00608 378071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00608 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Cmo03g00608 549 PANTHER SCARECROW-LIKE PROTEIN 13 18 548 IPR030005 -
Cmo03g00608 549 Pfam GRAS domain family 178 549 IPR005202 -
Cmo03g00608 549 MobiDBLite consensus disorder prediction 84 117 - -
Cmo03g00608 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 548 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00608 Cmo-Chr3:5732226 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo03g00608 Cmo-Chr3:5732226 Cmo07g00344 Cmo-Chr7:1601636 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9395 PF03514 GRAS 2.50E-125 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00608 - - mcha:111005597 984.556