Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00624 ATGGCCTCAATTGCTGGTTCCAAGGCTTCCTCAAATCAGCCACAAAAAACAGCTAATGGTGAAATGGCTAATGGAAAGGATGCCGGGCTATTGCCTCCGAAGATTTCCAAGTTAAGTAAACCTGAATCAGTTCCTTCTGATCAGTCGAAGTCAGTAAAGAGTATCTCAAAGCAGGATATGGAAATATCTTCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCTTCACCTGGTCTGAAACAAACTTCAACTGAAGTAGATTCCCCTCACAATGAAGCTAGATGCTCACCTGGAAGCTCACTAGACCAGGAGAAGAAAACATCAGAATATGGAAGTGTTAAGAGCAGTTCTGTTTCCGGCAAAGTAAGCGATGGAACTAGCTGCCTTGCCAAGACCAGTGGAAGTGCAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGCAGAGGGAGCACGAGCAGTGATATAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCAATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGTGGAACCAAATGCCATTTTGCCATGAAGGTTATGGATAAAAATACTCTAGCGAGTCGCAAAAAATTGCTTCGTGCGCAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACAGAAAAATTCTCATGCTTGGTGATGGAGTTCTGTCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCACTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTAAAGCCAGAAAATGTCCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGCACTGTTAGTCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCCGAGGCTTTAAGAAAGAACACAGGTTACTGTGTGCAGCCTGCTTGCATTGAACCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCACGCCTCTTTTCTAGTAAGTCGAAGAAGGAACGGAAACCCAAAACTGAAATTGGAAATCAGGTCAGCCCATTGCCAGAGCTCATTGCAGAACCAACTGATGCCCGATCCATGTCTTTTGTTGGAACTCATGAGTACTTAGCACCTGAGATCATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATACGAGTTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACGTTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCGGTTGTTAGTTTTGCTGCAAAGGATCTGATAAGGGGATTGCTAGTGAAGGAACCACAACACAGATTGGCTTATAAACGTGGGGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCTACTCCTCCTGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCATCAACCAGTGAAAAGGCCGTTGCTATTGCAGCAGCAGCTGCTGCAGATAAAAAGGCTTCCGATAATTATCTTGAGTTTGATTTCTTTTAG 1842 43.87 MASIAGSKASSNQPQKTANGEMANGKDAGLLPPKISKLSKPESVPSDQSKSVKSISKQDMEISSDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTSTEVDSPHNEARCSPGSSLDQEKKTSEYGSVKSSSVSGKVSDGTSCLAKTSGSAKVSDHGNFVESGKSSICRGSTSSDISDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELSGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAVAIAAAAAADKKASDNYLEFDFF 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5785792 5789415 - CmoCh03G006240.1 Cmo03g00624 378087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00624 613 MobiDBLite consensus disorder prediction 90 139 - -
Cmo03g00624 613 PANTHER FLIPPASE KINASE 1-RELATED 5 613 - -
Cmo03g00624 613 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cmo03g00624 613 MobiDBLite consensus disorder prediction 41 58 - -
Cmo03g00624 613 MobiDBLite consensus disorder prediction 1 20 - -
Cmo03g00624 613 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00624 613 CDD STKc_phototropin_like 216 577 - -
Cmo03g00624 613 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Cmo03g00624 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Cmo03g00624 613 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 613 - -
Cmo03g00624 613 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00624 613 Pfam Protein kinase domain 218 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00624 613 MobiDBLite consensus disorder prediction 1 76 - -
Cmo03g00624 613 SMART serkin_6 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00624 613 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cmo03g00624 613 Gene3D Transferase(Phosphotransferase) domain 1 301 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01376 Cmo-Chr2:8174219 Cmo03g00624 Cmo-Chr3:5785792 3.36E-141 dispersed
Cmo03g00624 Cmo-Chr3:5785792 Cmo14g00690 Cmo-Chr14:3558241 0 dispersed
Cmo05g01322 Cmo-Chr5:10244098 Cmo03g00624 Cmo-Chr3:5785792 3.47E-143 dispersed
Cmo20g00198 Cmo-Chr20:969271 Cmo03g00624 Cmo-Chr3:5785792 8.29E-148 dispersed
Cmo13g00335 Cmo-Chr13:4328573 Cmo03g00624 Cmo-Chr3:5785792 0 transposed
Cmo18g00610 Cmo-Chr18:7402842 Cmo03g00624 Cmo-Chr3:5785792 0 transposed
Cmo19g00847 Cmo-Chr19:8226861 Cmo03g00624 Cmo-Chr3:5785792 2.74E-103 wgd
Cmo03g00624 Cmo-Chr3:5785792 Cmo07g00355 Cmo-Chr7:1640794 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74188 PF00069 Pkinase 9.60E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00624 K08286 - csv:101209748 1105.51