Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00639 ATGTTTCAGCAACAGAGTACTCATAATTCAAGCTTTCTTCAAAACAACTCATTAGTTCGTGAACAGAACATACCTTTTGATGCCAGCTCGATGGAACCCACAAATGGAAGCAATGATCCCAGCAAGCCCCCAAATTTGGCCTCAAAACAGAGATTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTGATGGGTGTTCAAGGTCTAACGATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCATCGTCTGATGGGAAAAAGGCTGACAAGAAGGATTCTATTGACGTTCTATCGAACATTGAGGGCTCGTCGGGAATGCAAATTACCGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAGCTTACTGGGGTTCTTTCAGGAGCAGCTCCAGTTGCCTCTTCCTTCTCAGCTCCTGCTTCTGGTGAGAACTGCCCAGAAACCGACAAGAACGACCCACCAACACCTGCGCCCACATCGGAGTTTCCTCGACAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCGTCACGAACCATTGACGCCCGATTCTGGTTGTCATAGCTCCCCAAATGAGAGCCCAAGGCCAGTGAAGAAGCAAAGACAGTACCAGGATGGTGCATTTGCCAAATCAGAGATGATACTCGCACATCAGATACTGGAGTCAAGTTTGAACTCCACTCACAAGGGATCACGCTCTGTTTTTCCAGCCAGAGAAACGTTGGATCCTTCATCTGGACTATCTATAGGGGATGATGAGCAGTTTGACTAA 984 46.75 MFQQQSTHNSSFLQNNSLVREQNIPFDASSMEPTNGSNDPSKPPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSIDVLSNIEGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLTGVLSGAAPVASSFSAPASGENCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSRHEPLTPDSGCHSSPNESPRPVKKQRQYQDGAFAKSEMILAHQILESSLNSTHKGSRSVFPARETLDPSSGLSIGDDEQFD 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5852404 5856186 + CmoCh03G006390.1 Cmo03g00639 378102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00639 327 MobiDBLite consensus disorder prediction 27 45 - -
Cmo03g00639 327 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Cmo03g00639 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 324 IPR044848 GO:0003700
Cmo03g00639 327 MobiDBLite consensus disorder prediction 27 47 - -
Cmo03g00639 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Cmo03g00639 327 Coils Coil 138 158 - -
Cmo03g00639 327 MobiDBLite consensus disorder prediction 193 280 - -
Cmo03g00639 327 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Cmo03g00639 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Cmo03g00639 327 MobiDBLite consensus disorder prediction 294 327 - -
Cmo03g00639 327 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Cmo03g00639 327 Gene3D - 48 107 - -
Cmo03g00639 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 324 - -
Cmo03g00639 327 MobiDBLite consensus disorder prediction 238 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00639 - - - cmax:111478721 604.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00639 Cmo-Chr3:5852404 Cmo06g00056 Cmo-Chr6:349595 2.81E-68 dispersed
Cmo03g00639 Cmo-Chr3:5852404 Cmo07g00368 Cmo-Chr7:1680538 5.89E-172 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo19g00231 CCT,CST 152 354 G2-like Transcription Factor Family AT5G16560 52.2 6.7e-42 169.1
Cmo09g00190 CCT 1 165 G2-like Transcription Factor Family AT5G42630 56.9 1.3e-39 160.6
Cmo12g00449 CCT,CST 4 143 G2-like Transcription Factor Family AT5G42630 58.3 9.4e-38 154.5
Cmo04g02159 . 20 256 G2-like Transcription Factor Family AT1G25550 52.2 1.1e-48 191.0
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT5G05090 54.3 5.7e-74 275.0
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.4e-72 270.4
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT5G05090 58.6 1.7e-70 263.5
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT5G05090 52.9 5.0e-70 261.9
Cmo06g01253 CST 12 316 G2-like Transcription Factor Family AT4G13640 56.9 9.5e-62 234.6
Cmo14g01946 CST 1 293 G2-like Transcription Factor Family AT4G13640 57.6 5.2e-60 228.8
Cmo02g01770 CST 87 356 G2-like Transcription Factor Family AT3G04450 52.4 7.3e-57 218.8
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo05g00868 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 1.2e-36 151.4
Cmo19g01150 . 1 379 G2-like Transcription Factor Family AT1G79430 53.6 3.0e-86 316.2
Cmo10g01273 . 1 376 G2-like Transcription Factor Family AT1G79430 50.9 6.7e-78 288.5
Cmo20g00312 . 1 366 G2-like Transcription Factor Family AT1G79430 53.0 1.5e-77 287.3
Cmo06g01253 CST 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cmo14g01946 CST 29 193 G2-like Transcription Factor Family AT1G79430 59.4 7.5e-37 152.1
Cmo03g00639 . 84 327 G2-like Transcription Factor Family AT2G01060 59.7 1.7e-53 206.8
Cmo07g00368 . 66 323 G2-like Transcription Factor Family AT2G01060 56.9 1.9e-52 203.4
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.7e-89 326.2
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT3G10760 60.2 7.4e-87 318.2
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT3G10760 59.2 1.1e-85 314.3
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT3G10760 58.6 1.5e-79 293.9
Cmo07g01147 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.5e-60 228.0
Cmo14g00500 . 1 193 G2-like Transcription Factor Family AT2G40970 59.4 1.4e-58 223.8
Cmo03g01093 . 1 204 G2-like Transcription Factor Family AT2G40970 58.5 5.4e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9398 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00639 Cmo_Chr03 FPKM 3.884623 5.204314 4.33231 6.07521 6.815825 7.504 5.809459 7.480647 4.637346 5.542039