Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00639 ATGTTTCAGCAACAGAGTACTCATAATTCAAGCTTTCTTCAAAACAACTCATTAGTTCGTGAACAGAACATACCTTTTGATGCCAGCTCGATGGAACCCACAAATGGAAGCAATGATCCCAGCAAGCCCCCAAATTTGGCCTCAAAACAGAGATTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTGATGGGTGTTCAAGGTCTAACGATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCATCGTCTGATGGGAAAAAGGCTGACAAGAAGGATTCTATTGACGTTCTATCGAACATTGAGGGCTCGTCGGGAATGCAAATTACCGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAGCTTACTGGGGTTCTTTCAGGAGCAGCTCCAGTTGCCTCTTCCTTCTCAGCTCCTGCTTCTGGTGAGAACTGCCCAGAAACCGACAAGAACGACCCACCAACACCTGCGCCCACATCGGAGTTTCCTCGACAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCGTCACGAACCATTGACGCCCGATTCTGGTTGTCATAGCTCCCCAAATGAGAGCCCAAGGCCAGTGAAGAAGCAAAGACAGTACCAGGATGGTGCATTTGCCAAATCAGAGATGATACTCGCACATCAGATACTGGAGTCAAGTTTGAACTCCACTCACAAGGGATCACGCTCTGTTTTTCCAGCCAGAGAAACGTTGGATCCTTCATCTGGACTATCTATAGGGGATGATGAGCAGTTTGACTAA 984 46.75 MFQQQSTHNSSFLQNNSLVREQNIPFDASSMEPTNGSNDPSKPPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSIDVLSNIEGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLTGVLSGAAPVASSFSAPASGENCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSRHEPLTPDSGCHSSPNESPRPVKKQRQYQDGAFAKSEMILAHQILESSLNSTHKGSRSVFPARETLDPSSGLSIGDDEQFD 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5852404 5856186 + CmoCh03G006390.1 Cmo03g00639 378102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00639 327 MobiDBLite consensus disorder prediction 27 45 - -
Cmo03g00639 327 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Cmo03g00639 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 324 IPR044848 GO:0003700
Cmo03g00639 327 MobiDBLite consensus disorder prediction 27 47 - -
Cmo03g00639 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Cmo03g00639 327 Coils Coil 138 158 - -
Cmo03g00639 327 MobiDBLite consensus disorder prediction 193 280 - -
Cmo03g00639 327 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Cmo03g00639 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Cmo03g00639 327 MobiDBLite consensus disorder prediction 294 327 - -
Cmo03g00639 327 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Cmo03g00639 327 Gene3D - 48 107 - -
Cmo03g00639 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 324 - -
Cmo03g00639 327 MobiDBLite consensus disorder prediction 238 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00639 Cmo-Chr3:5852404 Cmo06g00056 Cmo-Chr6:349595 2.81E-68 dispersed
Cmo03g00639 Cmo-Chr3:5852404 Cmo07g00368 Cmo-Chr7:1680538 5.89E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9398 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00639 - - cmax:111478721 604.364