Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00649 ATGAGGGTTATTTGCCTTCTAGTATTGATGCTTCTCTTCAATGGGAGTTCTTCAATTGGAGATAGCAAAAATGTATCCATGAGACCTGATGTTGTCGACATTGGGGCTTTATTCTCTTTCAGTTCTATGATCGGCAGAGTTGGAAAAATTGCCGTGGAAGCTGCGGTCGAGGATGTAAATTCCGATCCATCCATCTTGGGGGGGACGAAGCTGAAGCTCAGTTTACATGATACCAATTACAGTGGATTCTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACTAAGACTTTGGCCATAATTGGCCCACAAAACTCTGTGACTGCTCATGTTTTATCTCATATTGCAAACGAGCTCCAAGTCCCTTTATTGTCGTTTTCGGCTACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATTAGAACTTCACAGAATGATCTGTATCAGATGGCTGCCGTAGCTGAAATAGTTGATTACTTTCAATGGAGACAAGTGATTGCCATCTTTGTTGATGACGACCATGGTAGAAATGGTATTGCAGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCGTTAAAAGTACCATTGAAGCCTGATGCAAGTCGAGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTATCAGAGTCTCGGATACTCGTTGTTCACACTTATGAGACCACAGGTATGGTGGTGCTCGATGTGGCTCGATCTCTTGGAATGACAGAACCTGGGTATGTATGGATAGCTACTAACTGGCTTTCTTTACTACTCGACACGAATTCTCCTCTACCTTCTTCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTGCGTCTTTATTCACCAGATTCTGCACTGAAGAGGAGTTTTGTTTCAAGGTGGACTAACTTGACTAATGGAAAGGCATCAAGTGGTCCGCTCGGGTTGAGTACGTATGGATTATATGCTTACGATACGGTTTGGATGCTGGCTCATGCAATAAACGCATTTCTTAATGAAGGTGGAGATCTTTCATTCTCAAAACCTTCCAAGTTTACTGGAACTGATGTTGGAACTTTGAACTTGAACTCTATGAGCATCTTCAATGGTGGGAAGACACTACTTCATAGAATTTTAGACGTCAAGTTTACTGGAATAACAGGTCGAGTTGAGTTCACTCCAGATAGGGACATAATCCGCCCTGCATTCGAAGTGATCAACATAATCGGCACGGGAGAGAGGAGAATTGGTTATTGGTCTAACTATTCTGGTTTGTCAACTGTGCCTCCTGAAAGCCTTTACTCGAAACCACCTAACCGAACCAGTTCTAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACACAGAAGCCTCGTGGATGGGCATTTCCAAACAGTGGAAGACGATTGAGAATCGGAGTCCCGAGACGAGTAGGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACCGACATGTTCCGAGGCTACTGCGTCGATGTCTTTACTGCAGCAATCAACTTGTTGCCTTATGCAGTCCCCTATAAGTTAATTCCATTTGGAGATGGCGTTACTAATCCGAGCGGAACCGAACTTGTTCGTCTACTCTCAACTGGGGTCTTTGATGCAGCTATGGGTGACATCGCAATTATCACGAACCGAACCAGGATGGCCGACTTTACGCAGCCATACATCGAGTCTGGCTTAGTAGTCGTAGCCCCGGTCAAGAAGTTGAACTCTAATGCTTGGGCTTTTTTACGGCCGTTCACCCCGAAGATGTGGTGCATTACTGCTGTGTCTTTTCTTGTAATAGGAGCAGTTGTTTGGACTTTAGAGCATCGGATAAATGACGATTTTCGGGGGCCTCCGAAGCGACAAATTATTACTATTCTATGGTTCAGCTTTTCAACTCTGTTCTTCTCTCATCGGGAAAACACCGTCAGTACCCTCGGTCGAATCGTGCTGCTCGTATGGTTATTTGTTGTTCTAATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTCAAAGGGATTGAAACTTTGATTTCAAACAATGACCCAATTGGCTATCAGCAGGGTTCATTTGCTCGAAACTACTTGATCGAGGAACTTGGCATTCATGAGTCGAGACTCGTTCCACTCGTCTCAACAGAACACTATGTCAAAGCATTGAATGACGGGCCAACGAATAACGGTGTTGCTGCTATTATCGACGAGCGAGCATATGTAGAGCTCTTCCTTTCGACCCGTTGCGAATACAGCATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGCGACTCTCCTTTAGCAGTTGACATGTCCACAGCTATTCTTAGACTCTCCGAAAATGGTGATCTTCAAAGGATCCATGACAAATGGTTAATGAAAAGTGCTTGTACATCACAAGCCTCGAAATTCGAGGTGGATCGACTTCAGCTCGGTAGCTTTTGGGGACTTTTTCTAATATCTGGATTAGCCTGCTTGCTCGCTCTATTGATATACCTCTTTCTAACGGTGCGCCAATATAGCAAGCATTACCCTGAAGAACTTGGGTCTTCCGAGCGATCTTCTCGATCGTCAAGCTTGCATAGATTTCTTTCTTTTGCAGATGAAAAGGAAGAAGTCATCAAAAGTCGATCCAAGCGTCGACGGATGCAGGAGGCTTCGGTTCGAAGCATGAATGAAGAAAATTCGACATGCAGTTCAAGAAAACATGGCCATGATGATGGTTATGATATTGATGCATGA 2799 43.94 MRVICLLVLMLLFNGSSSIGDSKNVSMRPDVVDIGALFSFSSMIGRVGKIAVEAAVEDVNSDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTLAIIGPQNSVTAHVLSHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWRQVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTDALVKVALSESRILVVHTYETTGMVVLDVARSLGMTEPGYVWIATNWLSLLLDTNSPLPSSSMENIQGLVALRLYSPDSALKRSFVSRWTNLTNGKASSGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGDLSFSKPSKFTGTDVGTLNLNSMSIFNGGKTLLHRILDVKFTGITGRVEFTPDRDIIRPAFEVINIIGTGERRIGYWSNYSGLSTVPPESLYSKPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNSGRRLRIGVPRRVGYQEFVSQVEGTDMFRGYCVDVFTAAINLLPYAVPYKLIPFGDGVTNPSGTELVRLLSTGVFDAAMGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSNAWAFLRPFTPKMWCITAVSFLVIGAVVWTLEHRINDDFRGPPKRQIITILWFSFSTLFFSHRENTVSTLGRIVLLVWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLISNNDPIGYQQGSFARNYLIEELGIHESRLVPLVSTEHYVKALNDGPTNNGVAAIIDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLGSFWGLFLISGLACLLALLIYLFLTVRQYSKHYPEELGSSERSSRSSSLHRFLSFADEKEEVIKSRSKRRRMQEASVRSMNEENSTCSSRKHGHDDGYDIDA 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5886528 5890593 - CmoCh03G006490.1 Cmo03g00649 378112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00649 932 MobiDBLite consensus disorder prediction 890 907 - -
Cmo03g00649 932 Gene3D - 50 399 - -
Cmo03g00649 932 Gene3D - 147 424 - -
Cmo03g00649 932 MobiDBLite consensus disorder prediction 915 932 - -
Cmo03g00649 932 MobiDBLite consensus disorder prediction 890 932 - -
Cmo03g00649 932 Gene3D - 463 581 - -
Cmo03g00649 932 SUPERFAMILY Periplasmic binding protein-like I 28 462 IPR028082 -
Cmo03g00649 932 Pfam Bacterial extracellular solute-binding proteins, family 3 528 811 IPR001638 -
Cmo03g00649 932 Pfam Receptor family ligand binding region 50 408 IPR001828 -
Cmo03g00649 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cmo03g00649 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cmo03g00649 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Cmo03g00649 932 Gene3D - 756 818 - -
Cmo03g00649 932 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Cmo03g00649 932 PIRSF IGluLR_plant 1 929 IPR017103 -
Cmo03g00649 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 925 - -
Cmo03g00649 932 CDD GluR_Plant 469 811 - -
Cmo03g00649 932 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Cmo03g00649 932 Gene3D - 582 708 - -
Cmo03g00649 932 PANTHER GLUTAMATE RECEPTOR 3.6 13 925 - -
Cmo03g00649 932 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Cmo03g00649 932 Pfam Ligand-gated ion channel 812 843 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02083 Cmo-Chr1:14490476 Cmo03g00649 Cmo-Chr3:5886528 0 dispersed
Cmo03g00649 Cmo-Chr3:5886528 Cmo09g00038 Cmo-Chr9:167186 0 dispersed
Cmo19g00823 Cmo-Chr19:8110181 Cmo03g00649 Cmo-Chr3:5886528 0 wgd
Cmo03g00649 Cmo-Chr3:5886528 Cmo07g00376 Cmo-Chr7:1726781 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00649 K05387 - csv:101213408 1612.82