Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00652 ATGGGGAAGCAAGGACTAGCTTTTGGGGATTCAAGACAATCATGTACGGACCAAGAGGTTTTTCAACCGAAAAGCAAGAATTCGATTACGAAGAAGCTTTTGCAGCGGAGTGGTAATGGCATGGCAATGTTGGGGAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCCGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTTGTCAACAAGAATGGGCGATTCATGGGAGAAGCCTTTGTTGTCTTTGCTGGATCTTTGCAGGTTGAGTTCGCGTTGCAACGGGATCGACAGAATATGGGGCGTAGATATGTAGAAGTCTTTAGCTGCAAAAGGCAGGATTATTATAATGCTGTTGCTGCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACAATGGAAGTCCTCCTCCTCGACAAAAGAGGATCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTCGACCTTGCAGAAGAAAGGATACATATTGCAAGCCGTTCAGATGGGAAGGCTACTGGGGAGGCTTATGTGGAGTTTGCTTCAGCAGAGGATGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGGTACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCTAGGAGAGCTGAGTCAAGAGTTACTCTTCTCTGTGCGGTTTACTTGAAAAATGAGATGAGGCCTAGCCGACAGCTCCTGAAATTCAATTATTCAAGGAAGGGAAAATCCCTAAAAACCAGCCCAGATGGGTTTCAGGCATTTAAAAGATGGGCAACAGAAAATGGGAACTTGTGCGTGATTCTTAAGCCAAATGACGAAGAAGTTCAACATCCAATCACCATTCCATCTCCTGAAGAACCACTTTTGGTTCATTCTTTATTCTCTGCTTGGAGTTTTCTGCTCTTTGAATTTGTCTTCTTCACAGAACAGAATAAGAGCAGCTTCCATATGACGAGTTCTGGGTTCAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTGTTTTCCCAAGCTAAACGATGAGAAGTTTCTTCATCAAGACCTCAACTTCCTTCCTTGCTCTTCTTCAATGGCTGTATCTAAAGGGCCCGAGATTCATCAAATGAAAGAACTCTGTGAACCAGGTGGGGAATTCCCAGTTCTTGCAAAGAAGAAAAGGAGAGCTACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACAGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAAATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAACGAGGTCGATTGCAGAAAATTCGACCATTGGCCCGAACAAAACCTGCTATAGCTATGCTCAGGCCTGCCCACAGGATAGAAAAGAACAAGTGTCGAATATCATAGCGAGCTGCAAAAGATAA 1917 44.13 MGKQGLAFGDSRQSCTDQEVFQPKSKNSITKKLLQRSGNGMAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRSDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRVTLLCAVYLKNEMRPSRQLLKFNYSRKGKSLKTSPDGFQAFKRWATENGNLCVILKPNDEEVQHPITIPSPEEPLLVHSLFSAWSFLLFEFVFFTEQNKSSFHMTSSGFSTEFPNVADPMHDSYLSCFPKLNDEKFLHQDLNFLPCSSSMAVSKGPEIHQMKELCEPGGEFPVLAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALTRSIAENSTIGPNKTCYSYAQACPQDRKEQVSNIIASCKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5900474 5905759 + CmoCh03G006520.1 Cmo03g00652 378115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00652 638 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
Cmo03g00652 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Cmo03g00652 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 279 IPR000504 GO:0003723
Cmo03g00652 638 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 42 296 - -
Cmo03g00652 638 Gene3D - 91 176 IPR012677 -
Cmo03g00652 638 CDD RRM_hnRNPH_ESRPs_RBM12_like 210 282 - -
Cmo03g00652 638 Pfam RWP-RK domain 484 531 IPR003035 -
Cmo03g00652 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Cmo03g00652 638 SUPERFAMILY RNA-binding domain, RBD 87 172 IPR035979 GO:0003676
Cmo03g00652 638 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 42 296 - -
Cmo03g00652 638 CDD RRM_hnRNPH_ESRPs_RBM12_like 94 163 - -
Cmo03g00652 638 ProSiteProfiles RWP-RK domain profile. 466 551 IPR003035 -
Cmo03g00652 638 Gene3D - 194 297 IPR012677 -
Cmo03g00652 638 SMART rrm1_1 210 282 IPR000504 GO:0003723
Cmo03g00652 638 SMART rrm1_1 94 163 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00652 K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H - csv:101213884 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01802 Cmo-Chr1:13248136 Cmo03g00652 Cmo-Chr3:5900474 3.95E-10 dispersed
Cmo03g00652 Cmo-Chr3:5900474 Cmo20g00091 Cmo-Chr20:457708 7.30E-77 dispersed
Cmo03g00652 Cmo-Chr3:5900474 Cmo07g00378 Cmo-Chr7:1735733 4.52E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1190 . . . . . . . . . . Cma03g00624 . Car03g00579 . . . . . . . . . . . . . . . . . . Cone8ag0893 Cone12ag0864 . . . . . . . . . . . . . . . Cmo03g00652 . . . . . . . . . . . . . . . . . . . . . . Csa06g03401 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005883 2 2 1 1 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9399 PF00076 RRM_1 8.30E-09 CL0221 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00652 Cmo_Chr03 FPKM 70.375259 76.5756 52.342445 56.93829 34.105431 33.036354 33.364376 88.430794 86.522408 85.928444