Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo03g00655 | ATGGCGTTTTCCGATGAGAATAATCCCAACTTGATCAAACCCACTGGGTTTCTTCCAGGAGGAGGGTTGGAGGAGAGAGGGAGAGCTAATAATCGGAGGGCTCTTATTGATATTAATAAAAATTCTGTGGTGAATCAAGCCTACCCTTGTGTTGTTAACAAGAGAGGCCTCTCGGGAAAGCAAGAAATCTGCGAGAAAAAGCAGGTTGATCCATTTCATAGACCGATTACGAGAAAGTTTGCTGCTCAAATCGCGAGTAGCCAACAGCTTCATCATCTTTCCCAAGAAAATAATGCATTTGGGCATTCCATATTTGTAGACGAAGATTGCAAAACCATAGAAAACGACCATCCAGTTCCCATGTTCTTGGAGAAACCAGAGCCATCATTGTCTCAAGAACCAAGCCAAATGGAGGAGGTTGAAATGGAGGATATTGCAGAAGACGACGCTGACGCCGATGCCGACGACCCGGTAATCGACATCGATAGTGTCGATTCCGAGAACCCGCTTGCGGTTGTCGAGTATGTCGACGATCTCTATGAACACTACAGAAAAATTGAGAATTCAAGCTGTGTTCCTCCAAATTACATGAACAAACAAATTGATATTAATGAGAAGATGAGAGCTATATTGATTGATTGGCTTATAGAGGTGCACGACAAGTTTGATCTGATGGGAGAAACATTGTTCCTTACTGTGAATCTCATAGACAGGTTTTTGTCACAAAAAACAGTAGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTGTTGGCTTGCAAGTACGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAACAGAAGTTCTTGAACTGGAGACAGTGATGTTGAACTGTTTGCAGTTTAACATGTCTGTTCCCACACCCTTTGTCTTCCTCCAAAGGTTCCTTAAGGCTGCTCAAGCTGACAAAAAGCTCGAGCTGATGGCGTTCTTCTTGATCGAACTCTCGCTGGTCGAGTATGAAATGCTGAGGTTCCCACCGTCGTTGCTAGCAGCGGCGGCGACATATACAGCTCAATGTACTATTGCCGGAGTGGAGTGTTGTTGGAGCCGGACATGCGAGTGGCATTCCAGCTACTCAGAAGAGCAGCTCCTAGAATGCTCGAGACTAATGGTGGGGTTTCATCAAAAGGCGGCGACCGGGAAGCTCACCGGAGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAACGTGAACCTGCACACTTTCTTTTGCAGACTCAGCAATAA | 1299 | 44.57 | MAFSDENNPNLIKPTGFLPGGGLEERGRANNRRALIDINKNSVVNQAYPCVVNKRGLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHLSQENNAFGHSIFVDEDCKTIENDHPVPMFLEKPEPSLSQEPSQMEEVEMEDIAEDDADADADDPVIDIDSVDSENPLAVVEYVDDLYEHYRKIENSSCVPPNYMNKQIDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRTEVLELETVMLNCLQFNMSVPTPFVFLQRFLKAAQADKKLELMAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTIAGVECCWSRTCEWHSSYSEEQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKREPAHFLLQTQQ | 432 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5920759 | 5923813 | + | CmoCh03G006550.1 | Cmo03g00655 | 378118 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo03g00655 | 432 | Gene3D | - | 192 | 304 | - | - | |
| Cmo03g00655 | 432 | CDD | CYCLIN | 207 | 296 | IPR013763 | - | |
| Cmo03g00655 | 432 | Pfam | Cyclin, N-terminal domain | 178 | 304 | IPR006671 | - | |
| Cmo03g00655 | 432 | SMART | cyclin_7 | 310 | 393 | IPR013763 | - | |
| Cmo03g00655 | 432 | SMART | cyclin_7 | 213 | 297 | IPR013763 | - | |
| Cmo03g00655 | 432 | SUPERFAMILY | Cyclin-like | 305 | 424 | IPR036915 | - | |
| Cmo03g00655 | 432 | PANTHER | CYCLIN-B2-1 | 22 | 427 | - | - | |
| Cmo03g00655 | 432 | PANTHER | CYCLINS | 22 | 427 | IPR039361 | - | |
| Cmo03g00655 | 432 | SMART | Cyclin_C_2 | 306 | 424 | IPR004367 | - | |
| Cmo03g00655 | 432 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cmo03g00655 | 432 | PIRSF | Cyclin_A_B_D_E | 21 | 432 | IPR039361 | - | |
| Cmo03g00655 | 432 | SUPERFAMILY | Cyclin-like | 167 | 303 | IPR036915 | - | |
| Cmo03g00655 | 432 | Pfam | Cyclin, C-terminal domain | 306 | 419 | IPR004367 | - | |
| Cmo03g00655 | 432 | CDD | CYCLIN | 304 | 392 | IPR013763 | - | |
| Cmo03g00655 | 432 | ProSitePatterns | Cyclins signature. | 208 | 239 | IPR006671 | - | |
| Cmo03g00655 | 432 | Gene3D | - | 178 | 419 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g02069 | Cmo-Chr1:14424211 | Cmo03g00655 | Cmo-Chr3:5920759 | 1.35E-162 | dispersed | |
| Cmo03g00655 | Cmo-Chr3:5920759 | Cmo07g01148 | Cmo-Chr7:6157067 | 1.18E-82 | dispersed | |
| Cmo09g00056 | Cmo-Chr9:258209 | Cmo03g00655 | Cmo-Chr3:5920759 | 3.82E-40 | dispersed | |
| Cmo03g00655 | Cmo-Chr3:5920759 | Cmo07g00380 | Cmo-Chr7:1754220 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo03g00655 | K21777 | - | csv:101216622 | 729.554 |