Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00677 ATGGCGGAAAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTTAAAATCTTCGAGGCCACCCAGTTGCCTAACATGGACATAGTATCCGAGCGTCTACGTCGTTGCTTCACTGCTTGTGGTACTCTCAACTGCTCCGCCATTAAATCCGTCGCTACCAACTCACGTTCTGCCGCCGGTGAGGGGAAAGTCCACCACAGCCATGGAAAAATCATCACCAGTGACCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCGCGAACTCGCGTTATTAAGAATTCCCAAAACCCCAATTGGAACGAGCATTTCGTTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAGGACGATGATGTCTTTGGCGCTGAAGTTATGGGGACAGTCAAAATCCCGGCTCAGCAAATTGCCTCTGGTCAGACAATTAGTGGGTGGTTTCCGGTGCTTGGCTCAAATGGGAAGCCACCGAAGCCCGGCACTTCACTACGAATTGAAATGAAGTTCACCCCTGTTGAAAAGAATCCGGTGTACCGCCACGGCATTGCTGGAGATCCGGAGCATAAGGGTGTGCGGCACACTTATTTTCCGGTGAGGAGAGGCAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGATGCTGCCGGTGATTGAATTGGATGGAAAGAATGTTTATAGACAAGAGAATTGTTGGGAGGATATCTGCCATGCTATATCAGAGGCTCATCATATGATTTACATCGTTGGTTGGTCAGTTTTTCATAAGATCAAGCTGGTTAGAGAGACAACCAGGCTGCCACGAGGTGGGGAACTTATTCTTGGTGATCTCCTCAAATACAAGTCAGAGGAGGGTGTTCGAGTATTGATGATGATTTGGGATGATAAGACTTCTCATGATAAGTTCTTCATCAATACAGGGGGATTGATGCAGACACACGACGAGGAAACCAAGAAATTTTTCAAGCATTCTTCAGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCAGCAAGCTAAGCTATGTTAAACAAAAGGTTGTAGGCACTGTCTTCACGCATCATCAGAAATGTGTCCTTGTTGATACTCAAGGATATGGTAATAATAGGAAGATCACTGCTTTTCTTGGAGGTCTTGATCTCTGTGACGGTCGTTACGATACACCCGAGCATCGACTATTCCATGGCCTCGACACGGTATTTAAGGATGATTTTCATAATCCTACATTCCCTGGAGCCAAAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATCGATGGGCCAGCTGCATATGACGTGCTTATAAACTTTGAGCAACGTTGGAGCCGAGCCACAAGATGGACCGAGTTTGGCCTACGCTGCAGGAACATTACTCACTGGCGCGATGCTTTAATCAAGATAGAGCGCATATCATGGATACTAAGCCCTCAAATAACCATCTTAGCTGATGGTTCAATAAAAGTTCCAGAGGATGACCCCAAAGTATATGTTTCAAACGAAAAAGATCCTGAAAACTGGCATGTTCAGATATTTCGATCCATCGACTCGGGATCGGTTAAAGGATTCCCAAGAGATGTCCATGTCGCGGAGTCGCAGAACCTTGTATGTGCCAAAAACTTGGCTATAGAGAAAAGCATTGAAATGGCATATATCCAGGCTATTCGATCGGCGCAACGTTTCATTTACATTGAAAACCAGTATTTTATAGGATCATCATATGGATGGCCGGGATATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAATGAAAGATTTGTTGTGTATATTGTCATACCAATGTGGCCTGAGGGAGATCCCAATAGCGCTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACCATGCAAATGATGTATGACATTGTTGCAAGTGAGCTGAAATCATTAGAGCAACCATATTTGCACCCTCAGGACTATCTAAACTTCTACTGCCTTGGCAAACGGGAAAAAGTTCCAGAGAATGGGCCAACCACTGATGATGCAACGGTATCTAATTCAATAAAACATCAACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGATGAATATGTAATTATTGGGTCTGCAAATATTAACCAACGATCTATGGCTGGAACGAAGGACACCGAGATAGCCATGGGCGCATATCAGCCACATCACACGTGGGCGAAGAAAAAGAAACACCCACATGGTCAGATTTACGGATACAGAATGTCGTTATGGAGTGAGCATCTTGGAATGCTCGATCCATGTTTCAACGAGCCAGAAACTTTGGAATGTGTAAGAAGAGTCAACGGGGTAGCAGAGGATAACTGGAAGCGATTCACCGCCGATGAATTCACGACGTTGCAAGGCCACCTCCTCCGGTATCCGGTGCTCGTGGATGGCGATGGGAGAGTCACCCTGCTGCCTGGACATGAAAACTTCCCTGATGTAGGAGGGAAGATAATAGGATCTCATTCAGCTGCAATTCCTGATGTTTTGACCACATAG 2568 46.14 MAESSEEVYLHGDLDLKIFEATQLPNMDIVSERLRRCFTACGTLNCSAIKSVATNSRSAAGEGKVHHSHGKIITSDPYVTVRVPQATVARTRVIKNSQNPNWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQQIASGQTISGWFPVLGSNGKPPKPGTSLRIEMKFTPVEKNPVYRHGIAGDPEHKGVRHTYFPVRRGSSMRLYQDAHVPDGMLPVIELDGKNVYRQENCWEDICHAISEAHHMIYIVGWSVFHKIKLVRETTRLPRGGELILGDLLKYKSEEGVRVLMMIWDDKTSHDKFFINTGGLMQTHDEETKKFFKHSSVICVLSPRYPSSKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHGLDTVFKDDFHNPTFPGAKAPRQPWHDLHCRIDGPAAYDVLINFEQRWSRATRWTEFGLRCRNITHWRDALIKIERISWILSPQITILADGSIKVPEDDPKVYVSNEKDPENWHVQIFRSIDSGSVKGFPRDVHVAESQNLVCAKNLAIEKSIEMAYIQAIRSAQRFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRANERFVVYIVIPMWPEGDPNSAPMQEILYWQGQTMQMMYDIVASELKSLEQPYLHPQDYLNFYCLGKREKVPENGPTTDDATVSNSIKHQRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHHTWAKKKKHPHGQIYGYRMSLWSEHLGMLDPCFNEPETLECVRRVNGVAEDNWKRFTADEFTTLQGHLLRYPVLVDGDGRVTLLPGHENFPDVGGKIIGSHSAAIPDVLTT 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5991150 5997029 - CmoCh03G006770.1 Cmo03g00677 378140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00677 855 PANTHER PHOSPHOLIPASE D DELTA 5 855 - -
Cmo03g00677 855 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 356 391 IPR001736 GO:0003824
Cmo03g00677 855 Gene3D Endonuclease Chain A 515 752 - -
Cmo03g00677 855 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 177 IPR035892 -
Cmo03g00677 855 SMART pld_4 356 391 IPR001736 GO:0003824
Cmo03g00677 855 SMART pld_4 700 727 IPR001736 GO:0003824
Cmo03g00677 855 PANTHER PHOSPHOLIPASE D 5 855 IPR015679 -
Cmo03g00677 855 PIRSF PLD_plant 1 855 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo03g00677 855 Pfam Phospholipase D Active site motif 356 391 IPR001736 GO:0003824
Cmo03g00677 855 Pfam Phospholipase D Active site motif 701 727 IPR001736 GO:0003824
Cmo03g00677 855 Pfam C2 domain 12 154 IPR000008 -
Cmo03g00677 855 Gene3D Endonuclease Chain A 226 464 - -
Cmo03g00677 855 Pfam Phospholipase D C terminal 775 844 IPR024632 -
Cmo03g00677 855 SUPERFAMILY Phospholipase D/nuclease 551 785 - -
Cmo03g00677 855 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 700 727 IPR001736 GO:0003824
Cmo03g00677 855 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Cmo03g00677 855 SMART C2_3c 13 151 IPR000008 -
Cmo03g00677 855 SUPERFAMILY Phospholipase D/nuclease 212 457 - -
Cmo03g00677 855 CDD C2_plant_PLD 8 175 - -
Cmo03g00677 855 Gene3D C2 domain 11 184 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00677 Cmo-Chr3:5991150 Cmo05g00331 Cmo-Chr5:1463539 0 dispersed
Cmo08g01217 Cmo-Chr8:7720766 Cmo03g00677 Cmo-Chr3:5991150 1.51E-17 dispersed
Cmo17g00333 Cmo-Chr17:2001738 Cmo03g00677 Cmo-Chr3:5991150 2.50E-18 dispersed
Cmo01g00070 Cmo-Chr1:288813 Cmo03g00677 Cmo-Chr3:5991150 1.19E-178 transposed
Cmo03g00677 Cmo-Chr3:5991150 Cmo07g00397 Cmo-Chr7:1805774 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00677 K01115 - csv:101217251 1597.02