Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00683 ATGCAATTACAGGAGCCGGTTATCAGATTGAGGAGTTTTGCTGCTTTGAATTGTCGTCGTGAAGGCTTACTATGGTACAAGGATATTGGACAGCACATGAATGGTGAATTTTCAATGGCTGTTGTCCAGGCTAATAACTTGCTTGAGGATCAAAGCCAGATCGAATCGGGTTCATTGAGCTTGGTCGAGTCCGGGCCATATGGAACCTTTATTGGTGTTTATGATGGTCATGGTGGACCGGAAGCATCAAATTACATATATGATAATCTTTTCCAGCATCTAAAAAGGTTCACCTCAGAACAACAATCAATGTCTTCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTCATTTCTTTAGTGACTAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCCGTGCTTGGAAGGGTCATGCGTGCAACGGAGGAGGTTATCGCCGTGCAGCTATCAGCTGAGCATAATGTGAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATTTAAAGAGGGCCGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCATTTACTCGACCGATATTGAGCTGTGAACCATCAATTTCGGTGCATGAACTTCAACCACATGATCAATTCATCATATTTGCCTCTGATGGCATGTGGGAGCACATTAGCAATCAGCAAGCTGTAGATATTATTCGAAATCACCCCCATAATGGAAGTGCTAAGAGGTTGGTAAAAGCTGCTATGCTGGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGATGGAAATTGATCGTGGTGTACGCCGCCATTTTCACGACGACATCACCGTCATAGTTGTATTTCTTGACTCTAATCTTGTAAGCAGAGCGAGCTCGGTCCGAGGTCCAACCATGTCTTTGAGAGGGCGCGGTGTTATCATACCTACAAAATCTCTAGCTCCTTGTGCCACACCTACAGAGCTTCACACAATCTGA 1161 44.36 MQLQEPVIRLRSFAALNCRREGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLVESGPYGTFIGVYDGHGGPEASNYIYDNLFQHLKRFTSEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVMRATEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVHELQPHDQFIIFASDGMWEHISNQQAVDIIRNHPHNGSAKRLVKAAMLEAAKKREMRYSDLMEIDRGVRRHFHDDITVIVVFLDSNLVSRASSVRGPTMSLRGRGVIIPTKSLAPCATPTELHTI 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6014543 6017561 - CmoCh03G006830.1 Cmo03g00683 378146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00683 386 CDD PP2Cc 37 344 IPR001932 -
Cmo03g00683 386 ProSitePatterns PPM-type phosphatase domain signature. 70 78 IPR000222 GO:0043169
Cmo03g00683 386 Gene3D - 26 354 IPR036457 -
Cmo03g00683 386 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 17 374 - -
Cmo03g00683 386 Pfam Protein phosphatase 2C 69 315 IPR001932 -
Cmo03g00683 386 ProSiteProfiles PPM-type phosphatase domain profile. 36 344 IPR001932 -
Cmo03g00683 386 SUPERFAMILY PP2C-like 45 345 IPR036457 -
Cmo03g00683 386 PANTHER ALPHABET, ISOFORM E-RELATED 17 374 - -
Cmo03g00683 386 SMART PP2C_4 30 342 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00266 Cmo-Chr2:1281411 Cmo03g00683 Cmo-Chr3:6014543 0 dispersed
Cmo03g00683 Cmo-Chr3:6014543 Cmo07g00399 Cmo-Chr7:1819193 0 dispersed
Cmo20g00446 Cmo-Chr20:2072912 Cmo03g00683 Cmo-Chr3:6014543 3.25E-40 dispersed
Cmo16g01301 Cmo-Chr16:9262899 Cmo03g00683 Cmo-Chr3:6014543 0 wgd
Cmo20g00737 Cmo-Chr20:3678588 Cmo03g00683 Cmo-Chr3:6014543 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00683 K01102 - csv:101219696 690.263