Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00697 ATGGCGCCTCCCAAAGTCGATGCTGCATACCTCAAGGAAATCGAGAAGGCCCGTCGAGACCTTCGCGCTCTAATCGCCAAGGAGAATTGCGCTCCTATTATGCTTCGTCTAGCGTGGCATGATGCAGGTACTTATGATGCTAAAACCAAAACTGGAGGTCCCAATGGTTCTATCAGATTCATGAATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAAACTGTGAAGGCCAGACATCCAAAAATCACATATGCAGACCTTTATCAGCTTGCTGGGGTTGTTGCTGTGGAGGTCACTGGCGGGCCATCCATTGACTTTGTCCCTGGAAGAAAGGACTCCAATGTAGTTCCAGAAGAAGGGCGCCTTCCAGATGCCAACCAAGGTGCTTCCCATTTAAGAGATATCTTTTACAGGATGGGACTAACTGACAAGGATATTGTGGCATTGTCTGGAGGCCACACATTGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACTAAGGACCCTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGCTGAAAAAAGGCTCTGGGTCTGACCAACAACTACTGAAGCTTCCTACAGACAAGGCCTTGCTCGCGGATCCTCGGTTTTCCCAATATGTGAAGGCATATGCAGAGGATGAAGAGAAGTTTTTCGAGGATTATGCAGCATCACACAAGAAACTGTCTGAGCTAGGCTTCGTTTCACCTCCCACAGTTCTCACGGACAGTGCTTCCTCATGGACAAATCGGATTGTGGTAGCCACAATCGTAGCAGCTGTGGCGATACTGAGCTACAAAAGACTCATCTCGCCTGAGGGGGTTGCCTTTCCAACTCTCTTCTGA 885 47.57 MAPPKVDAAYLKEIEKARRDLRALIAKENCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRFMNELNHTANKGLKIAVDFCETVKARHPKITYADLYQLAGVVAVEVTGGPSIDFVPGRKDSNVVPEEGRLPDANQGASHLRDIFYRMGLTDKDIVALSGGHTLGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKKGSGSDQQLLKLPTDKALLADPRFSQYVKAYAEDEEKFFEDYAASHKKLSELGFVSPPTVLTDSASSWTNRIVVATIVAAVAILSYKRLISPEGVAFPTLF 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6074801 6077963 + CmoCh03G006970.1 Cmo03g00697 378160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00697 294 Gene3D Peroxidase, domain 2 130 239 - -
Cmo03g00697 294 SUPERFAMILY Heme-dependent peroxidases 7 248 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 Gene3D - 17 246 - -
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Plant ascorbate peroxidase signature 223 247 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601
Cmo03g00697 294 PANTHER L-ASCORBATE PEROXIDASE 5, PEROXISOMAL 2 279 - -
Cmo03g00697 294 Pfam Peroxidase 18 227 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 Coils Coil 11 31 - -
Cmo03g00697 294 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 2 279 IPR044831 GO:0004601|GO:0034599
Cmo03g00697 294 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Cmo03g00697 294 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g00697 294 CDD ascorbate_peroxidase 4 247 - -
Cmo03g00697 294 ProSiteProfiles Plant heme peroxidase family profile. 89 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00697 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101220337 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00697 Cmo-Chr3:6074801 Cmo19g00742 Cmo-Chr19:7621692 4.16E-142 dispersed
Cmo03g00697 Cmo-Chr3:6074801 Cmo01g00583 Cmo-Chr1:2957431 3.09E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1146 . . . . . . . . . . Cma03g00672 . Car03g00618 . . . . . . . . . . . . . . . . . . . . Cone6ag1693 Cone9ag1617 Lsi01g00584 . . . . Blo06g00285 . . . . . . . Cmo03g00697 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00555 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00697 Cmo_Chr03 FPKM 9.927342 10.906086 5.708776 5.875755 5.247966 4.773773 5.988166 12.172324 13.929185 13.638805