Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00698 ATGATGGAAATGTGGAACGCTCCTCCGGGCTTCAGGCCTTCCAAATCCGCCCCTTCTTCTCCGGCGAAGCCTCTCGGCGTTTCGAGGCTCCGTTCCGATGCACACCATGTCATTCATAAGGTTCCAGTAGGCGATACGCCCTATTTGGTGAACAAGGATCCGGATAAGGCGATTCCTCTTTTTTGGGCCGCCATTAATGCCGGGGACAGAGTTGATAGTGCCTTGAAAGACATGGCCATTGTTATGAAGCAGCAGAATCGAGCCGAAGAAGCGATTGAAGCGATTAAATCGTTGCGAAGTCGGTGCTCTGATCAGGCTCAAGAGTCTCTGGACAATATTCTTTTGGATCTATACAAGAGATGTGGAAGATTGGACGACCAGATAACTCTTTTGAAACATAAATTGTTCTTGATCCAACAAGGTTTGGCGTTCAATGGTAAGCGGACTAAAACCGCCCGATCTCAAGGAAAGAAGTTTCAAGTCTCCGTTGAGCAAGAAGCAACTAGATTACTGGTAAGACGATGGCATCTTGTAATCAACAATTTCCCTGAGAAATTCAACTTAGATTTTGAAGTGTTTGATGCCATTTTTGTAATCATCAACAATTTCTCTGAGAATTTCAACTTAGATTTTGAAGTGTTTGATGGAATTCTTGTAATCAACAATTTCTCTGAGAATTTCAACTTAGATTTTGAAGGGAACTTAGGATGGGCGTTGATGCAGCAAAACAATTATGTTGAAGCCGAAGAGGCTTATAGGAAAGCACTTTCAATTGCACCTGATAATAACAAAATGTGTAACCTTGGAATCTGTTTGATGAAACAAGGGAGAATTTCAGAGGCTAAAGCAACTCTACACAGAGTTAAGCCAGCAGTTGCCGATGGGCCAAGAGGCACAGATTCCCACCTCAAAGCTTATGAAAGAGCACAACAGATGCTCCAAGATCTCGAGTCTGAAATGATGAATGGGGGCGGCGACAGGCTCGAACAGAGGCGGCTTTTCGACGCCTTTCTTGGTTCTTCGTCGATTTGGCAACCTCAACCTTGCAAGGATCATACAACCTTTCCAACATTGCCTGTCACAAATCCTATTAGGATGGTGATTCAAGATGACTTTGGTGATGAGAATGTTGATACCAATTTCTTGGCAAATCAGATGGTTCCTCCTCCTCAACAGCAGAAATTCAGCTCAAAAGTTCAAGCTCCCTTAGGGGGGAACTCATTGAATGTTGCTGCTCAACCATTTTTTTCATCAAAATTATTTAGTGAACCCATTTCAATGGCCCCCTTGGGGAACCAATTTCCTGAAGGGCTGAAGAGAACAAGATCCGGAAATGCAGCCAATTCAATGAGAATGAATGACATGGTGGAATCAAAAAGGCCATTTGTAGTGGAATCAGGGAGGCCTGAAACTAAGACAAGAAGGTCATCTCCTACCTCTGAGGAGACAGACAAATGGGCAGAAATATTGCCTGATGACAATGACTTTGAGGAGGCTATTCTTGCTGCAGTTCTAGGCTCCACAGATGAACCAGAGAAGCAAGCAGCATCCAATGGCAGCGCCGTCGTCAACGGTGGCGGCATGATTCAAAGTAAGATTGAGAAAAGGCTCAAGGTTTTTGAAGACATTACACTTTCCTTGAGTCCCAGAGCCTAA 1656 44.14 MMEMWNAPPGFRPSKSAPSSPAKPLGVSRLRSDAHHVIHKVPVGDTPYLVNKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQITLLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLVRRWHLVINNFPEKFNLDFEVFDAIFVIINNFSENFNLDFEVFDGILVINNFSENFNLDFEGNLGWALMQQNNYVEAEEAYRKALSIAPDNNKMCNLGICLMKQGRISEAKATLHRVKPAVADGPRGTDSHLKAYERAQQMLQDLESEMMNGGGDRLEQRRLFDAFLGSSSIWQPQPCKDHTTFPTLPVTNPIRMVIQDDFGDENVDTNFLANQMVPPPQQQKFSSKVQAPLGGNSLNVAAQPFFSSKLFSEPISMAPLGNQFPEGLKRTRSGNAANSMRMNDMVESKRPFVVESGRPETKTRRSSPTSEETDKWAEILPDDNDFEEAILAAVLGSTDEPEKQAASNGSAVVNGGGMIQSKIEKRLKVFEDITLSLSPRA 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6078347 6080484 - CmoCh03G006980.1 Cmo03g00698 378161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00698 551 PANTHER PROTEIN POLLENLESS 3-LIKE 2 4 171 IPR044961 -
Cmo03g00698 551 SUPERFAMILY TPR-like 48 285 IPR011990 GO:0005515
Cmo03g00698 551 MobiDBLite consensus disorder prediction 507 526 - -
Cmo03g00698 551 MobiDBLite consensus disorder prediction 511 525 - -
Cmo03g00698 551 PANTHER PROTEIN POLLENLESS 3-LIKE 2 233 548 IPR044961 -
Cmo03g00698 551 Coils Coil 299 319 - -
Cmo03g00698 551 MobiDBLite consensus disorder prediction 1 28 - -
Cmo03g00698 551 MobiDBLite consensus disorder prediction 465 484 - -
Cmo03g00698 551 Pfam Tetratricopeptide repeat 239 295 - -
Cmo03g00698 551 ProSiteProfiles TPR repeat profile. 229 262 IPR019734 GO:0005515
Cmo03g00698 551 Gene3D Tetratricopeptide repeat domain 48 290 IPR011990 GO:0005515
Cmo03g00698 551 PANTHER PROTEIN POLLENLESS 3-LIKE 2 233 548 - -
Cmo03g00698 551 Coils Coil 81 108 - -
Cmo03g00698 551 SMART tpr_5 229 262 IPR019734 GO:0005515
Cmo03g00698 551 PANTHER PROTEIN POLLENLESS 3-LIKE 2 4 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00698 - - - dzi:111317253 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00698 Cmo-Chr3:6078347 Cmo14g01929 Cmo-Chr14:14306186 1.16E-15 dispersed
Cmo03g00698 Cmo-Chr3:6078347 Cmo07g00412 Cmo-Chr7:1880541 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1144 . . . Bda10g00208 . . . . . . Cma03g00674 . Car03g00619 . . Cpe19g00869 . . . . . . . . . . . . . . . . . . . Lsi01g00585 . . . . Blo06g00290 . . . . . . . Cmo03g00698 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00698 Cmo_Chr03 FPKM 215.024048 236.883636 288.646973 289.385895 62.651997 61.953617 62.16283 459.40625 505.009827 430.4151