Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00699 ATGGCTAGATACGATAGGGCAATCACTGTCTTCTCCCCTGACGGCCATTTGTTTCAAGTCGAATACGCTCTCGAAGCTGTGCGGAAGGGTAACGCCGCCGTTGGTGTTCGTGGCACCGATACTATCGTCCTCGGTGTTGAGAAGAAGGCTGCGCCTAAGCTCCAAGACTCCAGAAGTTCGAATCATCCCGTTATCTGCTTATTTCATGCGATTTTGTTCTATTCTGGTGATATCATTTCAATAAATGGTGCCTGGTGGTGTCCCTTGCTTAACATTGCTGGTTTGTTGTGCTCGTTGGACTGCTTGCTTTGCTATACTAAGATGACTACATCTGTGAGGAAGATTGTGAATCTTGATAACCATATTGCACTAGCTTGTGCTGGGCTCAAGGCAGATGCACGTGTCTTGATAAATAGGGCTCGGATCGAGTGTCAAAGCCATCGGCTTACAGTTGAGGATCCAGTAACTGTTGAGTATATTACTCGTTACATTGCAGGTCTCCAACAGAAGTACACCCAAAGTGGTGGAGTGAGACCGTTTGGCCTTTCAACCTTGATTATAGGTTTTGACCCATATACTGGCACACCCTCACTGTACCAGACAGATCCTTCTGGGACATTTTCAGCTTGGAAAGCAAATGCAACCGGTAGAAACTCCAATTCGATAAGGGAATTCTTAGAGAAAAATTATAAGGAAACTTCTGGTCAGGAAACTGTGAAGCTTGCAATCCGTGCATTGCTTGAGGTTGTTGAGAGTGGTGGAAAGAACATAGAGGTCGCCGTGATGACAAAGGAGCATGGACTGCGACAATTGGAAGAAGCTGAAATTGATGCTCTCGTTGCAGAAATTGAAGCAGAAAAGGCAGCTGCTGAGGCTGCAAAAAAAGCTCCTCCCAAGGAAACATGA 906 45.92 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKAAPKLQDSRSSNHPVICLFHAILFYSGDIISINGAWWCPLLNIAGLLCSLDCLLCYTKMTTSVRKIVNLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPYTGTPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGKNIEVAVMTKEHGLRQLEEAEIDALVAEIEAEKAAAEAAKKAPPKET 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6083070 6086459 - CmoCh03G006990.1 Cmo03g00699 378162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00699 301 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 12 281 IPR029055 -
Cmo03g00699 301 Pfam Proteasome subunit 108 262 IPR001353 GO:0005839|GO:0051603
Cmo03g00699 301 Coils Coil 269 296 - -
Cmo03g00699 301 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 109 300 - -
Cmo03g00699 301 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 67 - -
Cmo03g00699 301 CDD proteasome_alpha_type_7 4 262 - -
Cmo03g00699 301 ProSiteProfiles Proteasome alpha-type subunit profile. 19 280 IPR023332 -
Cmo03g00699 301 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 80 IPR029055 -
Cmo03g00699 301 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Cmo03g00699 301 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 100 298 IPR029055 -
Cmo03g00699 301 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
Cmo03g00699 301 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 67 - -
Cmo03g00699 301 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 109 300 - -
Cmo03g00699 301 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00699 K02731 PSMA7; 20S proteasome subunit alpha 4 [EC:3.4.25.1] - csv:101221038 414.075
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00699 Cmo07g00414 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00699 Cmo-Chr3:6083070 Cmo18g00539 Cmo-Chr18:4100568 1.08E-45 dispersed
Cmo16g01291 Cmo-Chr16:9198015 Cmo03g00699 Cmo-Chr3:6083070 6.72E-155 wgd
Cmo03g00699 Cmo-Chr3:6083070 Cmo07g00414 Cmo-Chr7:1886279 2.08E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1139 Blo04g00877 Blo16g00088 . . Bpe15g00479 Bpe13g00408 . . . . Cma03g00675 Cma07g00416 Car03g00620 Car07g00366 Sed14g1202 Cpe19g00867 Cpe10g00674 Bhi03g00844 Tan03g2096 Cmetu04g0205 . Hepe04g1605 . . Cla01g01990 Cam01g2088 Cec04g1745 Cco04g1810 Clacu01g2106 Cmu01g1982 Cre04g1659 Cone8ag0859 Cone12ag0822 . . Lsi01g00587 . . Cme08g00945 . . Bda11g01829 . . . . . . Cmo03g00699 Cmo07g00414 Cma16g01244 . . . . . . . . . . . . . . . . . . . Lsi07g01093 Csa06g03343 Chy02g00558 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002432 2 1 2 0 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00699 Cmo_Chr03 FPKM 2.159844 2.353904 0.0 0.0 2.564754 4.036032 2.023318 0.0 0.0 0.0