Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00701 ATGTTCGTGGCGCCTTATCATTGGCTTAATAGGATCAATAGACTATACTGCGAGGCACTAGATTGCGTCCTCTTTGGCTCTGGAAACAAGCAAAGATTTGCAGGGAAGACCGAAGCGACGATGATCTGTATTGACAACTCCGAATGGATGCGGAATGGAGATTACAGTCCTTCAAGATTTCAAGCTCAAGAAGATGCCATCAATCTTATTTGTGGCGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGAGTTCTGACAATGGCGGGAAAAGGTGTTCGTGTGCTTGTCACTCCGACCACTGACCTTGGCAAGATACTGGCATGCATGCACGTTCGTAGCAACGCAGACCTACCACCAGATACCAATCTGCTGTCCTTAATTAGAGGAAGTTACACCAGTTCTCCTGGATTCCTGGTTATTTCTGGACGTTTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAGTTGGCTCTTAAGCATCGTCAGAACAAAAAGCAGCAACAAAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAAAAGTTACTGGAGGCGATTGGAAGGAAGTTAAAGAAGAACAATGTCACCCTTGACATTGTTGATTTTGGCGAAGAAGATGATGGCAAACCTGAGAAACTGGAAAGTCTTCTGGCAGCTGTGAATAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGGTTGGGTTTTGAGTCTGTTTTATTTCAAGATTTTTTGTACTTTTTGTGTCATTACACTTTGTATCCTCATTTTAAGTTTTCTTTATTTGATTTCAGTACTCCTATCTTTACTGGAGACGGGGAAGGTGGGAGTGGTTTTGCAGCAGCTGCGGCGGCTGCTGCTGCTGGTGGCGTATCTGGTTTTGATTTTGGAGTTGATCCCAACTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAAGCAGCTGCTAAAAAGGCTGCAGAGGAGAATACAAAGCAAGAAAAAGGAGCAGAGCAGCCATCTGGCTCACAGGATGCAACTATGACTGAGCGTCCTGAACTTGCAACTTCTGATGCCGAAAACAAGACTGCTGATTTAATGGATGATGATAATGCACTGCTACAACAAGCCCTTGCTATGTCCATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCAGAAGTAGCATCAGATGATCCTGATTTGGCACTTGCTCTTCAGTTATCGGTGCAGGAAGGCTCTAGTGATTCGACAAGTCAGACAGATATGAGCAAATTGTTGGCCGATCAGTCTTTTGTGTCTTCTATTCTAGCTTCACTTCCAGGCGTAGATCCAAATGACCCTTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCCGAGGATAAGAAAAATGAAGACAAAGCACCAAAGGAAGATGAAAAATGA 1506 44.49 MFVAPYHWLNRINRLYCEALDCVLFGSGNKQRFAGKTEATMICIDNSEWMRNGDYSPSRFQAQEDAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHVRSNADLPPDTNLLSLIRGSYTSSPGFLVISGRLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEAIGRKLKKNNVTLDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLIRLGFESVLFQDFLYFLCHYTLYPHFKFSLFDFSTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERPELATSDAENKTADLMDDDNALLQQALAMSMDNPSATSDIRDIDMSEVASDDPDLALALQLSVQEGSSDSTSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEDKKNEDKAPKEDEK 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6097507 6102625 - CmoCh03G007010.1 Cmo03g00701 378164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00701 501 CDD VWA_26S_proteasome_subunit 38 251 - -
Cmo03g00701 501 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 37 111 - -
Cmo03g00701 501 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 144 252 - -
Cmo03g00701 501 Gene3D von Willebrand factor, type A domain 37 251 IPR036465 -
Cmo03g00701 501 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 37 111 - -
Cmo03g00701 501 SUPERFAMILY vWA-like 37 246 IPR036465 -
Cmo03g00701 501 Pfam von Willebrand factor type A domain 40 180 IPR002035 -
Cmo03g00701 501 SMART VWA_4 36 241 IPR002035 -
Cmo03g00701 501 Coils Coil 330 355 - -
Cmo03g00701 501 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 422 441 IPR003903 -
Cmo03g00701 501 Gene3D - 318 409 - -
Cmo03g00701 501 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 283 501 - -
Cmo03g00701 501 MobiDBLite consensus disorder prediction 338 378 - -
Cmo03g00701 501 MobiDBLite consensus disorder prediction 486 501 - -
Cmo03g00701 501 Pfam Ubiquitin interaction motif 390 403 IPR003903 -
Cmo03g00701 501 Pfam Ubiquitin interaction motif 322 335 IPR003903 -
Cmo03g00701 501 Pfam Ubiquitin interaction motif 422 437 IPR003903 -
Cmo03g00701 501 MobiDBLite consensus disorder prediction 357 372 - -
Cmo03g00701 501 MobiDBLite consensus disorder prediction 338 356 - -
Cmo03g00701 501 SMART uim 390 409 IPR003903 -
Cmo03g00701 501 SMART uim 320 339 IPR003903 -
Cmo03g00701 501 SMART uim 422 441 IPR003903 -
Cmo03g00701 501 MobiDBLite consensus disorder prediction 463 501 - -
Cmo03g00701 501 ProSiteProfiles VWFA domain profile. 39 253 IPR002035 -
Cmo03g00701 501 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 320 339 IPR003903 -
Cmo03g00701 501 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 283 501 - -
Cmo03g00701 501 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 144 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00701 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 672.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00701 Cmo07g00415 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00701 Cmo-Chr3:6097507 Cmo06g00110 Cmo-Chr6:625580 0 dispersed
Cmo16g01288 Cmo-Chr16:9172735 Cmo03g00701 Cmo-Chr3:6097507 0 wgd
Cmo03g00701 Cmo-Chr3:6097507 Cmo07g00415 Cmo-Chr7:1890147 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00701 Cmo_Chr03 FPKM 4.218875 3.896507 0.090414 0.0 3.563636 2.620291 4.425235 0.0 0.0 0.0